Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0380
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.17 
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = -3

Query: 227 VYLHTYTYCIRVVQSLFLYA*KYNYSK*RIFQTNSFVVYLLFYYYCSGDSFSIEL*F*IL 48
           VY   Y + I  V  LFL    Y       F    F +  ++Y+YC+   F++ L F + 
Sbjct: 113 VYYFYYAFIIFTVHLLFLLCIYY-------FVVPLFFLLCIYYFYCAFIIFTVHLLFLLC 165

Query: 47  I---STVFKISTNDLISC 3
           I      F I T  L+ C
Sbjct: 166 IYHFFCAFIIFTMHLLFC 183



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 107 LFYYYCSGDSFSIEL*F*ILISTVFKI 27
           ++Y+YC   +F++ L F +L S  F +
Sbjct: 56  IYYFYCVSITFNVHLLF-LLCSGYFTV 81



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 139 FFKLIALLFTCFFTITVQAIVFQLNCNFEF 50
           +F  + LLF C F I    ++F L C + F
Sbjct: 260 YFYYMHLLFCCAFIIFTMHLLFLL-CIYYF 288


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = +2

Query: 137 KYVTLNNYIFKHTKTMTAQHV-YSMYMYVGIPIPIIHTNCCTF 262
           KY  +  Y+     +    HV ++ YMY    I      CC F
Sbjct: 42  KYFIIAIYVLTILTSSVTLHVCFNSYMYAFTHIFFFFAICCDF 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,265
Number of Sequences: 336
Number of extensions: 3144
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)