Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0380
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0895 + 7506460-7507929                                           28   7.2  
08_01_0193 + 1599970-1600503,1601488-1601919,1602010-1602147,160...    28   9.5  

>07_01_0895 + 7506460-7507929
          Length = 489

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 711 KSYIIHPKSITLFIYI*SRPKRGTFIYVF---KWSR 613
           ++Y +HPK  T F+ +      GTF Y     KW+R
Sbjct: 309 EAYAVHPKGRTFFVSVRQVDDEGTFSYSVESGKWTR 344


>08_01_0193 +
           1599970-1600503,1601488-1601919,1602010-1602147,
           1602532-1602600
          Length = 390

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 265 QNICSLV--WNYISECSSSRIYVCIF 336
           QNI SL   W+ +  CSS   Y CIF
Sbjct: 347 QNIASLASRWHALVTCSSDSTYCCIF 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,569,432
Number of Sequences: 37544
Number of extensions: 233086
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)