Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0380
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)                    29   4.2  
SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)                    28   9.6  

>SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/95 (20%), Positives = 42/95 (44%)
 Frame = -1

Query: 361 YPVSL*TF*IYIHKF*KNYIQKCSSKQASRYFGKCTAISMYNRNRYTYIHIHTVYVLCSH 182
           +P+    F  ++H    N   +C+ +   +    C ++S  N NRY + H H + ++ + 
Sbjct: 157 FPIKFDLFKGHLH----NKTNECNGEWPFQPLAICYSVSFQNSNRYHHHHHHHIIIIINI 212

Query: 181 CFCMLKNIIIQSDVFFKLIALLFTCFFTITVQAIV 77
              ++   II   +   +I ++     TI +  I+
Sbjct: 213 IIIIIIINIIIIIIIIIIIIIIIIIITTIIIIIII 247


>SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)
          Length = 550

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/72 (25%), Positives = 29/72 (40%)
 Frame = -1

Query: 322 KF*KNYIQKCSSKQASRYFGKCTAISMYNRNRYTYIHIHTVYVLCSHCFCMLKNIIIQSD 143
           K  +  I+   S Q S  FG C  +  Y        H+     +  H F +++ + I   
Sbjct: 280 KLPEKLIRTSESIQCSGQFGVCLQVVRYVMVMCHVFHVALNVTVTCHVFQVVRYVTITCH 339

Query: 142 VFFKLIALLFTC 107
           VF  L  ++ TC
Sbjct: 340 VFHVLRYVMVTC 351


>SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -1

Query: 334 IYIHKF*KNYIQKCSSKQASRYFGKCTAISMYNRNRYTYIHIHTVYVLC-SHCFCMLKNI 158
           I IH    N+    S+  AS    +   I  Y ++    + ++  +V+C + CFC L   
Sbjct: 204 IQIHAQEMNFSTNSSNDSASETTERSINIKQYKKSVVNSLLVYFTFVICCTPCFCALTYF 263

Query: 157 IIQSDVF 137
            I  D +
Sbjct: 264 EITRDSY 270


>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
          Length = 434

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = -1

Query: 307 YIQKCSSKQASRYFGKCTAISMYNRN-RYTYIHIHTVYVLCSHCFCMLKNIIIQSDVFFK 131
           Y  K ++KQ  +Y      +S+Y+ +    Y++ H  +++   C+  L  III   +   
Sbjct: 142 YTAKETTKQCRQY------LSVYDIDVSRIYVNYHNHFIMLGFCYRCLSIIIIIVTIIII 195

Query: 130 LIALLFTCFFTITVQAIVFQLNCNFEF*YQQYLKSVLM 17
           +I +     FTI +  I+F +  N    Y Q     L+
Sbjct: 196 IIIVNVIVIFTIII-IIIFTVIVNVIAIYLQAFNYFLL 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,447,936
Number of Sequences: 59808
Number of extensions: 322919
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)