Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0380
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   7.3  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 110 GKQQSY*FEKYVTLNNYIFKHTKTMTAQHVYS 205
           GK+Q + FE    L +  FK  KT+  + ++S
Sbjct: 45  GKEQDFRFEAIQCLQSSAFKEIKTLPDRGMWS 76


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 635 INVPLFGRL*I*MNKVIDFG 694
           +NV L+G+L + + KV+ FG
Sbjct: 372 VNVQLYGQLDLLVRKVLGFG 391


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 634 YKRSPFWPTLNINEQSY*LWVYNVTLTQITALAL 735
           +K S F    +I  +SY +WV ++ +  +T++ +
Sbjct: 97  WKSSEFDSINSIRVKSYEIWVPDIVMHSVTSVGI 130


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 635 INVPLFGRL*I*MNKVIDFG 694
           +NV L+G+L + + KV+ FG
Sbjct: 372 VNVQLYGQLDLLVRKVLGFG 391


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 222 VYLFLLYILIAVHFPKYLLAC 284
           +YLFL  ILI  +F   ++ C
Sbjct: 8   IYLFLSVILITSYFVTPVMPC 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,735
Number of Sequences: 438
Number of extensions: 3705
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)