Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0379
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   3.5  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   4.6  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 109 LRGALFCSFKTNFILIQTEFIYPLQKSDVTRTED 210
           L G++FC F  NFI   T+   PL     + T+D
Sbjct: 158 LFGSIFCDFGENFICTDTDGNEPLTGMIASITDD 191


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 371 ILLFIYFFLFGPNTKCYL 424
           + L  +FF FGPNT C++
Sbjct: 463 VALAQFFFNFGPNTTCFV 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,870
Number of Sequences: 5004
Number of extensions: 48199
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)