Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0379
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)                 28   6.5  
SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)                 28   6.5  
SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)                 28   6.5  
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
          Length = 1191

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 407 NTKC-YLPLSKRILLTNVLIAN-EDLM*SKQYENDL*HKEISMLYSKNDLEELRVRVHYV 580
           NT+C Y  + K  L T   + +  DL+   ++  +  HK +  L++   ++EL VR+   
Sbjct: 763 NTECRYAQIEKEALATTWALEHWSDLLVGMKFTVETDHKPLVPLFTSKMIDELPVRIQRF 822

Query: 581 FIKIVK 598
            +++++
Sbjct: 823 RMRLMR 828


>SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
          Length = 890

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 407 NTKC-YLPLSKRILLTNVLIAN-EDLM*SKQYENDL*HKEISMLYSKNDLEELRVRVHYV 580
           NT+C Y  + K  L T   + +  DL+   ++  +  HK +  L++   ++EL VR+   
Sbjct: 618 NTECRYAQIEKEALATTWALEHWSDLLVGMKFTVETDHKPLVPLFTSKMIDELPVRIQRF 677

Query: 581 FIKIVK 598
            +++++
Sbjct: 678 RMRLMR 683


>SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
          Length = 765

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 407 NTKC-YLPLSKRILLTNVLIAN-EDLM*SKQYENDL*HKEISMLYSKNDLEELRVRVHYV 580
           NT+C Y  + K  L T   + +  DL+   ++  +  HK +  L++   ++EL VR+   
Sbjct: 600 NTECRYAQIEKEALATTWALEHWSDLLVGMKFTVETDHKPLVPLFTSKMIDELPVRIQRF 659

Query: 581 FIKIVK 598
            +++++
Sbjct: 660 RMRLMR 665


>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 407 NTKC-YLPLSKRILLTNVLIAN-EDLM*SKQYENDL*HKEISMLYSKNDLEELRVRVHYV 580
           NT+C Y    K  L T   + +  DL+   ++  +  HK +  L++   ++EL VR+  +
Sbjct: 508 NTECRYAQKEKEALATTWALEHWSDLLVGMKFTVETDHKPLVPLFTSKMIDELPVRIQRI 567

Query: 581 FIKIVK 598
            +++++
Sbjct: 568 RMRLMR 573


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,516
Number of Sequences: 59808
Number of extensions: 316048
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)