Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0378
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2... 61 2e-10
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 3.7
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.9
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 26 6.5
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 6.5
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 26 6.5
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 25 8.6
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 25 8.6
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 8.6
>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 60.9 bits (141), Expect = 2e-10
Identities = 31/55 (56%), Positives = 35/55 (63%)
Frame = +2
Query: 107 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFNLMGNQ 271
K EHINLKV+GQDN V FKIKK T KLM YC R G SM +RF + G +
Sbjct: 30 KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGER 84
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 259 DGQPINENDTPTSLEMEEGDTIEVYQQQTGG 351
DG+ I + TP L+ME+GD IE +Q GG
Sbjct: 81 DGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 412 LILTHWRWSILKIIKFTLGTLLR 344
L+ H RWS +++ K+ LGT +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.2 bits (55), Expect = 4.9
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 658 ALQQSCLRRRVN*TYHNGIVEVTYS--IWYTYNLPYHKLFETHNALRSSAMLYVSQNYFL 485
A+Q C VN T I + T+S ++Y + L E H + +SA L ++ NY L
Sbjct: 28 AIQIRCFFLTVNRT---PIPKQTFSLIVFYILIMIIQHLKEIHYLISASAKLLLASNYLL 84
Query: 484 TLL 476
LL
Sbjct: 85 ELL 87
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 205 HQFPERCVFLYFELYNCV 152
H+FP C+F F YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 172 FELYNCVILT*YFQINVFVFSLLFI 98
+E+YN +I + Y INV F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 205 HQFPERCVFLYFELYNCV 152
H+FP C+F F YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 51 SFVLIVSRTTLISKWLMKRREKTNTLI*KY*VKITQLY 164
+F+ + +LIS +L+K EK+N L K+ V I LY
Sbjct: 341 TFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLY 378
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 80 INLKM---ADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 223
IN+K A + K ++ HI + G+ NA+V+ KI K ++ + CD+
Sbjct: 158 INIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 250 IQFDGQPINENDTPTSLEMEEGDTIEV 330
++F+G+ ++ ND S E+E+ D + V
Sbjct: 377 LEFEGEWLDPNDQVQSTELEDEDQVSV 403
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -3
Query: 556 HKLFETHNALRSSAMLYVSQNYFLTLLQIQMMFL 455
H H L + + + NYF LLQ+Q + +
Sbjct: 331 HTSLNIHTGLAETLVQHTKNNYFQKLLQLQHLLV 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,776
Number of Sequences: 5004
Number of extensions: 58237
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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