Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0378
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532     60   2e-09
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782     58   6e-09
01_04_0034 + 15318509-15319567                                         35   0.078
07_03_0990 + 23173868-23174200                                         33   0.18 
07_03_0989 + 23161020-23161412                                         33   0.18 
01_06_1364 + 36684937-36685281                                         33   0.18 
07_03_0988 + 23160028-23160360                                         31   0.73 
08_01_0265 + 2148255-2150219,2150735-2150812                           28   9.0  

>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
          Length = 100

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 28/55 (50%), Positives = 35/55 (63%)
 Frame = +2

Query: 107 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFNLMGNQ 271
           +G   HINLKV GQD   V F+IK+ T L+KLMNAYCDR  + M  + F   G +
Sbjct: 15  EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRR 69



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 247 AIQFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 351
           A  FDG+ +    TP  LEME+GD I+    QTGG
Sbjct: 62  AFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96


>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
          Length = 101

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
 Frame = +2

Query: 98  DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFNLM 262
           DEKK     G   HINLKV GQD   V F+IK+ T L+KLMNAYCDR  + ++ + F   
Sbjct: 8   DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFD 67

Query: 263 GNQ 271
           G +
Sbjct: 68  GRR 70



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = +1

Query: 247 AIQFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 351
           A  FDG+ +N   TP  LEME+GD I+    QTGG
Sbjct: 63  AFLFDGRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97


>01_04_0034 + 15318509-15319567
          Length = 352

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 241 GSAIQFDGQPINENDTPTSLEMEEGDTIEVYQQQTG 348
           G  + ++G+ + ++ TP  L++E+GDTI    +Q G
Sbjct: 317 GCVLIYEGRRVQDSQTPDDLKLEDGDTIHAIARQVG 352



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 235 NAGSAIQFDGQPINENDTPTSLEMEEGDTIEV 330
           N   A+ + G+ +   +TP   EME+GD + +
Sbjct: 235 NGEWAVTYGGRQVGGEETPADYEMEDGDQLRL 266


>07_03_0990 + 23173868-23174200
          Length = 110

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 256 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVS 357
           +DG+ ++   TP  L+ME+GD ++ +++  GG +
Sbjct: 77  YDGRRLSGWQTPAELDMEDGDEVDFFEELIGGAA 110


>07_03_0989 + 23161020-23161412
          Length = 130

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 256 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVS 357
           FDG+ +    TP  L+ME+GD +  +++  GG +
Sbjct: 85  FDGRRLRGWQTPAELQMEDGDEVNFFEELIGGAA 118


>01_06_1364 + 36684937-36685281
          Length = 114

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 83  NLKMADEKKGENEH-INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF 253
           +LK+   + G     I + V  Q  A V F IK    LR++M+ YC +  L  + V+F
Sbjct: 17  DLKLVKAEPGTGPGLITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKF 74


>07_03_0988 + 23160028-23160360
          Length = 110

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 256 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 351
           FDG  +  + TP  LEM +GDT++ +    GG
Sbjct: 66  FDGIRLKGDMTPMGLEMVDGDTVDFFPVMIGG 97


>08_01_0265 + 2148255-2150219,2150735-2150812
          Length = 680

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 597 KLPTAFGILIIYLTTSYLRRIMLCVARLCYMCHKI 493
           +L  AFG++   L+T+   R+  C  RLC+ CHK+
Sbjct: 625 RLAVAFGLISTSLSTTL--RVTQC-HRLCHDCHKL 656


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,745,855
Number of Sequences: 37544
Number of extensions: 335593
Number of successful extensions: 582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)