Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0378
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like ...    51   8e-07
U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like ...    51   8e-07
AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo (ubiquit...    51   8e-07
Z81509-1|CAB04154.1|  332|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL023856-8|CAA19565.2|  326|Caenorhabditis elegans Hypothetical ...    29   4.6  
AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical...    28   6.1  

>X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = +1

Query: 256 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 351
           FDG+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 59  FDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
 Frame = +2

Query: 92  MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFNLM 262
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF   
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 263 GNQ 271
           G +
Sbjct: 61  GRR 63


>U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = +1

Query: 256 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 351
           FDG+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 59  FDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
 Frame = +2

Query: 92  MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFNLM 262
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF   
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 263 GNQ 271
           G +
Sbjct: 61  GRR 63


>AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo
           (ubiquitin-related) homologprotein 1 protein.
          Length = 91

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = +1

Query: 256 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 351
           FDG+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 59  FDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
 Frame = +2

Query: 92  MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFNLM 262
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF   
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 263 GNQ 271
           G +
Sbjct: 61  GRR 63


>Z81509-1|CAB04154.1|  332|Caenorhabditis elegans Hypothetical
           protein F21A3.1 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 550 LFETHNALRSSAMLYVSQNYFLTLLQI 470
           +  TH  + S AM+Y+ ++Y+ TLLQI
Sbjct: 280 MMATHGLVSSLAMIYLHKSYWATLLQI 306


>AL023856-8|CAA19565.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.3 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 574 TYNLPYHKLFETHNALRSSAMLYVSQNYFLTLLQI 470
           T NL Y  L  TH AL +  M+Y+ ++Y  T+LQI
Sbjct: 273 TNNLIYITL-STHGALSTLVMVYLQKSYRETVLQI 306


>AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical
           protein Y41D4B.24 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 595 VTYSIWYTYNLPYHKLFETHNALRSSAMLYVSQNY 491
           +  +IWYTY +P   L  +H A+ SS+ L V+ ++
Sbjct: 106 ILVNIWYTYMIPI--LTVSHIAMTSSSFLIVAASF 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,306,187
Number of Sequences: 27780
Number of extensions: 332963
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)