Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0377
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760...    31   0.76 
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362...    30   1.8  
06_03_1234 - 28586365-28587973,28590411-28590694                       29   5.4  
12_02_1109 + 26151421-26153601                                         28   7.1  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     28   9.4  
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407...    28   9.4  
07_03_1475 + 26791214-26791490,26793507-26793706,26793866-267945...    28   9.4  
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839...    28   9.4  

>08_01_0786 -
           7606984-7607037,7607235-7607379,7608103-7608163,
           7608273-7608465
          Length = 150

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 122 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEP 12
           E    +  AP    LPF S + + AR G APAL+A P
Sbjct: 2   EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAP 38


>10_08_0403 -
           17635530-17635578,17635737-17635820,17636110-17636219,
           17637507-17637638,17638497-17638576,17638877-17639008,
           17639534-17639648,17640244-17640286,17640359-17640493,
           17641347-17641414,17641473-17641478
          Length = 317

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +2

Query: 368 LGLGCRLREDLRCC--FGSQQ-----PTKTPSEPPGHHQRRLRPHVRKLCDHWLT 511
           LGLG  LR  L CC  +GS++     P      P G+H  RL P V  LC  W++
Sbjct: 128 LGLGTALRLALECCQEWGSRRSMPRLPMDGSMAPSGYHPVRLWPAV--LCLGWVS 180


>06_03_1234 - 28586365-28587973,28590411-28590694
          Length = 630

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
 Frame = +1

Query: 13  GSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC---------WRTRNAQA 165
           G+ A AG  P L  + ++L  GR  I G S+     S +  +          WR  N   
Sbjct: 527 GNPAGAGPPPRLDHVAVSLPGGRVLIFGGSV-AGLHSASQLYLLDPTEEKPTWRILNVPG 585

Query: 166 RQFTLAFGTANIFSGGTR 219
           R    A+G +    GGT+
Sbjct: 586 RPPRFAWGHSTCVVGGTK 603


>12_02_1109 + 26151421-26153601
          Length = 726

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 742 LLKNHSAFVSRHLNSSPDPGVERCDSSEAGRVASLAASV 626
           L KN S  + RHL+    P    C S+ AG +AS +ASV
Sbjct: 5   LTKNPSPLLHRHLHLLLQPR-RLCSSATAGELASESASV 42


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 91  CGASLLTNTRSVTAAHC 141
           CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291


>07_03_1704 +
           28839628-28839908,28840010-28840123,28840416-28840769,
           28841072-28841268,28841496-28841587,28841700-28842027,
           28842328-28842535,28843555-28843669,28844023-28844190,
           28844804-28845476,28845552-28845758,28845911-28847001
          Length = 1275

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 234 TGGGDPGAAGEDVSCTKSEGELTSL 160
           +GGG+PG  G++ S TK+ G +  L
Sbjct: 438 SGGGNPGMMGQNDSSTKTVGNMLHL 462


>07_03_1475 +
           26791214-26791490,26793507-26793706,26793866-26794507,
           26794888-26795038,26795434-26795583,26795675-26795847,
           26796088-26796195
          Length = 566

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 325 WMLLLKPTWLWLMMATSLLRLFMFSCRAGG 236
           W  LL  TWL ++   +LLRL+    R  G
Sbjct: 47  WAALLAVTWLLVLRLAALLRLWALGARLPG 76


>04_04_1271 -
           32282865-32283167,32283429-32283561,32283683-32283908,
           32284058-32284274,32284398-32284558,32285309-32285449,
           32285621-32286944
          Length = 834

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = -3

Query: 285 WRRRC*GCSCLAAVQVDTGGGDPGAAGEDVSCTKSEGELTSL 160
           W R    CSC+A    D GGG  G  G    C     +L  L
Sbjct: 384 WARCLANCSCVAYAPADIGGG--GGCGAGSGCIIWADDLVDL 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,739,297
Number of Sequences: 37544
Number of extensions: 289753
Number of successful extensions: 1147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)