Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0377
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    30   0.021
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 10  GGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 141
           GG+       P +AG+      G   ICGA++++    +TAAHC
Sbjct: 163 GGTNTGINEFPMMAGIKRTYEPGM--ICGATIISKRYVLTAAHC 204


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 255 NMNNLNNDVAIINHNHVGFNNNIQRI 332
           N NN NN+    N+ +  +NNN +++
Sbjct: 326 NYNNYNNNYNNYNNYNNNYNNNYKKL 351


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 210 AGEDVSCTKSEGELTSLGVPG 148
           AG D+S   + GE   LGVPG
Sbjct: 184 AGGDISSFITNGEWDLLGVPG 204


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 48  CWTCDRTHEWQNFH 89
           CW CD+  E++  H
Sbjct: 467 CWVCDQCEEYEYVH 480


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +3

Query: 12  WFCRQRWCSPPSCWTCDRTHE 74
           W CR ++    S W  D  H+
Sbjct: 926 WSCRCKFLQELSSWVSDNAHK 946


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 48  CWTCDRTHEWQ 80
           CW CD+  E++
Sbjct: 557 CWVCDQCEEYE 567


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 252 LNMNNLNNDVAIINHNHVGFNNN 320
           L+ N ++N+    N+N+  +NNN
Sbjct: 84  LSNNTIHNNNYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 252 LNMNNLNNDVAIINHNHVGFNNN 320
           L+ N ++N+    N+N+  +NNN
Sbjct: 84  LSNNTIHNNNYKYNYNNNNYNNN 106


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 605  GITSFGSDRGCQRG 646
            GITS GSD G   G
Sbjct: 1065 GITSSGSDSGSSNG 1078


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 255 NMNNLNNDVAIINHNHVGFNNN 320
           N NN NN+ A  N N  G +NN
Sbjct: 245 NNNNNNNNGANDNGNGNGASNN 266


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +3

Query: 3   ARGWFCRQRW 32
           + GW C  RW
Sbjct: 375 SNGWICEHRW 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,838
Number of Sequences: 438
Number of extensions: 2614
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)