Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0376
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 36 0.006
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 31 0.13
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ... 27 3.8
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|... 27 3.8
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 5.0
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 26 5.0
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 26 6.7
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 26 6.7
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 8.8
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 8.8
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 35.9 bits (79), Expect = 0.006
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 520 LRWVKKNIEKFGGNPEEVTIAGYSSGA 600
L W K+IE FGGN E + + G S+G+
Sbjct: 174 LEWTYKHIESFGGNKENIAVGGISAGS 200
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 263 FIYNEDCLIANVFVP 307
F Y+EDCL N++VP
Sbjct: 76 FKYDEDCLFLNIWVP 90
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 499 HERLVALLRWVKKNIEKFGGNPEE-VTIAGYSSGAAAVELL 618
H + +WV NIEK G NP+ + G S+G V +L
Sbjct: 141 HNDAIDSFKWVASNIEKLGANPKRGFFLGGASAGGNFVSVL 181
>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 268
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = -1
Query: 659 IALLNNPLVRSESIRSSTAAAP 594
+ALL P+V++ SI SST++AP
Sbjct: 30 VALLVGPIVQTLSIPSSTSSAP 51
>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 218 SFVYCFERFLPCWRRKRSLEL 156
SF+Y F +F PCW L +
Sbjct: 111 SFLYNFSKFYPCWSCAEDLRI 131
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 175 LRQHGRNLSKQ*TKESCVPN 234
LR+ RN Q TK++C+PN
Sbjct: 324 LRERKRNARSQATKDACMPN 343
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 26.2 bits (55), Expect = 5.0
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +1
Query: 496 RHERLVALLRWVKKNIEKFGGNPEEVTIAGYSSGAAAVELLMLSDLTRGLFNKAIPES-- 669
RHE + L + +K+G E T A G ELL+ +D T +F+ ES
Sbjct: 403 RHETYNSYLPLKVPDWKKYGVKKGETTSATSVVGQYLDELLVTNDSTLRIFSPDELESNK 462
Query: 670 --GSALASF-TIQRDPLANAKK 726
G+ S+ T+Q DP AK+
Sbjct: 463 LDGALKHSYRTMQTDPELMAKR 484
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 24 TEDA-IDEWKEVLLDQGPVRGYKDPEVDVFVFHGIPYASAT 143
T DA + + + LLD+ + GY+ + D VF + A T
Sbjct: 7 TSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDT 47
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 189 KEPFEAVDKGVMCPQHPVDM-GFKRNSSTMKIASSQMCLYQTPTIKIFLSLYMSTVVDT 362
K P ++ + P DM G+K + ++ S CL++ T + +LYM ++ T
Sbjct: 466 KSPSPSLPPNELNEPEPDDMDGYKEAFNELRCLSYVQCLFENITSSLNENLYMVDMLKT 524
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 522 EEGN*SFMPALPGASFVPRHRKPCAPKR*LKVIAIIFSPLTN 397
++GN S P P S R ++ P K I+I SP+ N
Sbjct: 28 KDGNHSNGPQTPSKSIFQRAKEWLTPSSWKKAISIFSSPVVN 69
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 631 GRRALEVQLQQLPSYIQRL*LLQ 563
G+R +E QL +LPSYI+ ++Q
Sbjct: 240 GQRGIERQLFELPSYIRATGIVQ 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,342
Number of Sequences: 5004
Number of extensions: 68173
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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