Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0376
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1685 + 39170428-39171735                                         33   0.19 
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419...    31   1.3  
07_03_0441 + 18256103-18258076                                         30   2.3  
03_02_0169 - 6099621-6099663,6099794-6099915,6100020-6100115,610...    30   2.3  
11_02_0102 + 8314115-8314540                                           28   9.2  
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435...    28   9.2  
04_01_0403 + 5283830-5284106,5284996-5285179,5285801-5286015,528...    28   9.2  
03_01_0488 + 3706416-3707948                                           28   9.2  

>01_06_1685 + 39170428-39171735
          Length = 435

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 481 GSG*CRHERLVALLRWVKKNIEKFGGNPEEV--TIAGYSSGAAAVELLMLSDLTRGLFNK 654
           G+G CR +    LLR V + +  + G  E+V  T+AG+S G +A+ LL   DL     N+
Sbjct: 232 GAGSCREQ----LLREVSRLVAAYSGGGEDVSVTLAGHSMG-SALALLSAYDLAELGLNR 286

Query: 655 AIP 663
           A P
Sbjct: 287 AAP 289


>06_03_1338 -
           29440373-29440534,29440993-29441083,29441799-29441942,
           29442094-29442159,29442589-29442729,29443077-29443178,
           29443264-29443338,29443469-29443549,29443670-29443739,
           29444063-29444139,29444392-29444660
          Length = 425

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +1

Query: 520 LRWVKKNIEKFGGNPEEVTIAGYSSGAAAVELLMLSDLTRGLFNKAIPESGSALAS 687
           + +V  NI  +GG+PE + + G S+GA      +L        ++AI ESG   AS
Sbjct: 209 IAFVCNNIASYGGDPERIYLVGQSAGAHIAACTLL--------HQAIKESGEGDAS 256


>07_03_0441 + 18256103-18258076
          Length = 657

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 132 ASATKGPDKFKAPLPPPTWKEPF 200
           A+A+ G    + PLPPP W EP+
Sbjct: 14  AAASHGGHPHQPPLPPPEWIEPY 36


>03_02_0169 -
           6099621-6099663,6099794-6099915,6100020-6100115,
           6100211-6100327,6100431-6100502,6100627-6100790,
           6100878-6100978,6101083-6101179,6101298-6101433,
           6101540-6101596,6101723-6101808,6102097-6102303,
           6103401-6103522,6103625-6103869
          Length = 554

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 689 KDARADPLSGIALLNNPLVRSESIRSSTAAAPELYPAIVTSSGFPPNFSMFFF 531
           K A A  +   AL  N    +E   ++ AAAPE  PA    SG+P    ++ F
Sbjct: 25  KRAAAVVVPDAALTMNGAAGAEEKTAAAAAAPEDLPAPAALSGWPRRVGLYLF 77


>11_02_0102 + 8314115-8314540
          Length = 141

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 442 LRCAWFSMSGHKRGSG*CRHERLVAL 519
           +  AW+S   H RG G CR  RLV L
Sbjct: 9   IEMAWWSRGRHPRGPG-CRRPRLVEL 33


>04_04_1354 -
           32841778-32841983,32842079-32843093,32843184-32843518,
           32843590-32844019,32844155-32844214,32844531-32844651,
           32845321-32846132
          Length = 992

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 498 PALPGASFVPRHRKPCAPKR 439
           PAL G  FVPRH  P  P +
Sbjct: 862 PALAGQGFVPRHPPPVLPNQ 881


>04_01_0403 +
           5283830-5284106,5284996-5285179,5285801-5286015,
           5286616-5286736,5286862-5286974,5287823-5288055,
           5288717-5288832,5288949-5289047,5289512-5289691,
           5289816-5289903,5289999-5290208,5290599-5290820
          Length = 685

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 493 CRHERLVALLRW-VKKNIEKFGGNPEEVTI 579
           CR E L  L RW ++ N+EKFGG   + T+
Sbjct: 444 CRVE-LNGLRRWYLRSNLEKFGGTDPQTTL 472


>03_01_0488 + 3706416-3707948
          Length = 510

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 665 SGIALLNNPLVRSESIRSSTAAAPELYPAIVTSSGFPPNFSMFF 534
           S +A   N L+R  +  SS AAA EL+ A+  +   P  F+  F
Sbjct: 83  SHLAFFYNTLMRGLAASSSPAAAIELFSAMRRAGAAPDAFTFTF 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,666,605
Number of Sequences: 37544
Number of extensions: 495673
Number of successful extensions: 1361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)