Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0376
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79270.1 68414.m09241 expressed protein contains Pfam profile...    31   1.1  
At4g11900.1 68417.m01893 S-locus lectin protein kinase family pr...    30   1.9  
At1g25410.1 68414.m03154 adenylate isopentenyltransferase 6 / ad...    29   2.5  
At2g25800.1 68415.m03096 expressed protein                             29   3.3  
At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR...    29   4.4  
At4g18550.1 68417.m02748 lipase class 3 family protein similar t...    29   4.4  
At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family...    29   4.4  
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family...    29   4.4  
At5g42920.2 68418.m05233 expressed protein                             28   7.7  
At5g42920.1 68418.m05232 expressed protein                             28   7.7  
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f...    28   7.7  

>At1g79270.1 68414.m09241 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 528

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = -1

Query: 695 IVKDARADPLSGIALLNNPLVRSESIRSSTAAAPELYPAIVTSSGFPPNFSMFF 534
           +VK+ + DPL+ +      +V ++  ++ + A P  Y  + T  G P  +  ++
Sbjct: 16  MVKNLKVDPLAKVTASTTSMVSAKENKNQSEAEPSYYETLETYQGLPCPYGGYY 69


>At4g11900.1 68417.m01893 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 849

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 379 VTEADLVSTTVDIYNDRKIFIVGVWYKHICDEAI 278
           + E  L + T D Y+ R  +I G+WY+H+  + I
Sbjct: 48  IFELGLFTPTPDTYDHRNYYI-GMWYRHVSPQTI 80


>At1g25410.1 68414.m03154 adenylate isopentenyltransferase 6 /
           adenylate dimethylallyltransferase / cytokinin synthase
           (IPT6) identical to adenylate isopentenyltransferase
           (IPT6) [Arabidopsis thaliana] GI:14279064
          Length = 342

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 310 VWYKHICDEAIFIVDEFLLK 251
           +W KHI DE++ IV +FLL+
Sbjct: 322 IWEKHIVDESVEIVKKFLLE 341


>At2g25800.1 68415.m03096 expressed protein
          Length = 996

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 505 RLVALLRWVKKNIEKFGGNPEEVTIAGYSSGAAAVELLMLSDLT-RGLFNKAIPESGSAL 681
           R+  L  WV +N+++    P E    GY+  AA  E+L ++D T    F   IP   + L
Sbjct: 608 RIDRLKEWVDRNLQQEVWKPLENLEGGYAQSAA--EVLRITDETLEAFFQLPIPMHPAVL 665

Query: 682 ASFTIQRD 705
               I  D
Sbjct: 666 PDLIIGLD 673


>At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1008

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 15  QTKTEDAIDEWKEVLLDQGPVRGYKDPEVD 104
           QTKT+D I +W+  L D   + G+     D
Sbjct: 126 QTKTDDEIQKWRRALTDVANILGFHSSNWD 155


>At4g18550.1 68417.m02748 lipase class 3 family protein similar to
           lipase [Dianthus caryophyllus] GI:4103627; contains Pfam
           profile PF01764: Lipase
          Length = 419

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 517 LLRWVKKNIEKFGGNPEEVTIAGYSSGAAAVELLMLSDLTRGLFN--KAIPESGSALASF 690
           +LR V + +EK+      +TI G+S G AA+  L  +D+    +N  K+ P+    + +F
Sbjct: 212 VLREVGRLLEKYKDEEVSITICGHSLG-AALATLSATDIVANGYNRPKSRPDKSCPVTAF 270


>At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family
           protein
          Length = 532

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 21  KTEDAIDEWKEVLLDQGPVRGYKDPEVDVFVFHGIPYASATK 146
           K ++  + WK  L ++G +   K P+V  F+ H + +    K
Sbjct: 228 KAKEIAETWKASLEERGGIENVKTPDVHTFLQHLVTFGIVKK 269


>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
           protein identical to hydroxyproline-rich glycoprotein
           [Arabidopsis thaliana] gi|9293881|dbj|BAB01784
          Length = 532

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 21  KTEDAIDEWKEVLLDQGPVRGYKDPEVDVFVFHGIPY 131
           K ++  + WK+ L ++G +   K P+V  F+ H + +
Sbjct: 230 KAKEIAETWKKSLEERGRIENVKTPDVHTFLQHLVTF 266


>At5g42920.2 68418.m05233 expressed protein
          Length = 819

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 270 TMKIASSQMCLYQTPTIKIFLSLYMSTVVDTKS 368
           T K  S +  LYQ   +KI L +Y   + DTKS
Sbjct: 326 TSKEGSDKAGLYQVHPLKIVLHIYDDEIPDTKS 358


>At5g42920.1 68418.m05232 expressed protein
          Length = 702

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 270 TMKIASSQMCLYQTPTIKIFLSLYMSTVVDTKS 368
           T K  S +  LYQ   +KI L +Y   + DTKS
Sbjct: 209 TSKEGSDKAGLYQVHPLKIVLHIYDDEIPDTKS 241


>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 892

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +3

Query: 84  YKDP-EVDVFVFHGIPYASATKGPDKFKAPLPPPTWKEPFEAVD-----KGVMCPQHPVD 245
           +K P +V + + HG    S+ +GP  F  PL     KEP    D      G++ P   V 
Sbjct: 571 HKGPGKVKLEILHGEQEKSSDRGPKCFGTPLVTYINKEPLSGTDIATSISGLLSPLRRVH 630

Query: 246 MGFKRNS 266
           M    NS
Sbjct: 631 MSCVVNS 637


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,072,383
Number of Sequences: 28952
Number of extensions: 378637
Number of successful extensions: 1126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)