Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0375
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    28   1.3  
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        28   1.7  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    27   2.3  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   3.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   5.3  

>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -2

Query: 427 SSRQK*RDRFRYIQTYLNILLSIYPATCTYKPTILYLRINESTIIKAGNLTF 272
           SS +  +   R +Q YL+ + ++Y     Y P++L L+   +T++ A  ++F
Sbjct: 659 SSTELRQSMTRNVQNYLDYIKNLYHRLGPYDPSLLALKQKTATMLAAMLISF 710


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 685 NEFNIFCIPVVFILYLFAGSLGSSSGKFLTLALARAVF 572
           N+F IFC  ++F  Y+ + SL   S  F+ + ++R+ F
Sbjct: 105 NDFQIFCTSILFTCYIQSFSL-LISNFFIAIEVSRSFF 141


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +2

Query: 119 SSPSKNTVQNLH*IKVNS*PVIYLRCRSEEFCDCQWNTKSIIRFSVYQSLSKSQIAGFDN 298
           S+PSKN +Q+LH    N+        +S+E+ D    T ++  FS +  L+ + ++GF +
Sbjct: 65  SNPSKNNIQHLH---PNTSEPFKTSSKSDEY-DSYPRTGNVPTFS-FTELNDTSVSGFGS 119

Query: 299 SRLIYTQV 322
             +    V
Sbjct: 120 QAVFENSV 127


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 261 NHCPKVRLPALIIVDSFIRRYSIVGL*VHVAGYIDN 368
           N  PK+ L AL+ +DS +    ++G  +    YI N
Sbjct: 247 NELPKISLQALLEIDSIVSGVLMLGFNILTLAYIAN 282


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 185  YLRCRSEEFCDCQWNTKSIIRFSVYQSLSKSQIAGFDNS 301
            YLR R  +F DCQ   K   R + ++SL KS     DN+
Sbjct: 1023 YLRLRDTDFLDCQNKRKQRWR-NRWESLLKSVRGTSDNT 1060


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,587
Number of Sequences: 5004
Number of extensions: 56963
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)