Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0375
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm rece...    31   1.2  
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    28   8.7  
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   8.7  

>AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm
           receptor protein 79 protein.
          Length = 358

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 694 RTNNEFNIFC----IPV-VFILYLFAGSLGSSSGKFLTLALARAVFCRIYHRIGIATH 536
           +  N FNI C    IP+  F+LY      G + G + TL +  AV C  +  + + T+
Sbjct: 11  KVTNWFNIICFSTSIPINFFLLYCVVTQSGRNIGDYKTLLIWFAVHCMAFPAVNLITN 68


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 682 EFNIFCIPVVFILYLFAG---SLGSSSGKFLTLALARAVFCRIY 560
           +F+IF +P++ I++L  G    LG S+G     +L R +  +IY
Sbjct: 545 QFHIFLMPLLVIVFLKWGMKVGLGLSTGLIALSSLIRLIITQIY 588


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 682 EFNIFCIPVVFILYLFAG---SLGSSSGKFLTLALARAVFCRIY 560
           +F+IF +P++ I++L  G    LG S+G     +L R +  +IY
Sbjct: 545 QFHIFLMPLLVIVFLKWGMKVGLGLSTGLIALSSLIRLIITQIY 588


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 172 LTCYLSKMSFRRVL*LPMEYKVNNSFFCLPIIVQKSDCR 288
           +TC+  K  FRR L  P EY   ++  C+    +++ CR
Sbjct: 39  VTCFGCKGFFRRTLKRPSEYTCRHNGHCVVDRHERNSCR 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,034,589
Number of Sequences: 27780
Number of extensions: 302622
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)