Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0375
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.4  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/15 (46%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = +1

Query: 460 IEFFDYDEER-IIPW 501
           +EFF +DE+R ++ W
Sbjct: 135 VEFFPFDEQRCVLKW 149


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 50  FDNRRLKYTKVNK 12
           F NRR+K+ K NK
Sbjct: 318 FQNRRMKWKKENK 330


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 85  IDMSIQIDLNIIVSFKEYG 141
           +D+++ +DL+I  + +EYG
Sbjct: 676 VDVTLPLDLHIQNAIREYG 694


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 50 FDNRRLKYTKVNKR 9
          F NRR+K+ K N R
Sbjct: 56 FQNRRMKWKKENAR 69


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = -2

Query: 670 FCIPVVFILYLFA 632
           +CIP++ I+Y ++
Sbjct: 220 YCIPMILIIYYYS 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,358
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)