Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0375
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identi...    28   6.1  
At1g27420.1 68414.m03342 kelch repeat-containing F-box family pr...    28   8.1  

>At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identical
           to CLC-b chloride channel protein GB:CAA96058 from
           [Arabidopsis thaliana] (J. Biol. Chem. 271 (52),
           33632-33638 (1996))
          Length = 780

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -2

Query: 700 ANRTNNEFNIFCIPVVFILY----LFAGSLGSSSGKFLTLALARAVFCRI 563
           ++ T NEF +  + + F+LY    LF   + + SG FL + L  A + R+
Sbjct: 443 SSNTPNEFGMGSLWIFFVLYCILGLFTFGIATPSGLFLPIILMGAAYGRM 492


>At1g27420.1 68414.m03342 kelch repeat-containing F-box family
           protein similar to MIPP proteins (gi|2191178,
           sp|P28575); contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 346

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 287 RQSDFWTMIGKQKNELLTLYSIGSHKTLRNDILDK 183
           R+  FW  +G   N++L    +  H+TL  D LDK
Sbjct: 287 REGGFWVRLGVWNNKVLLFSRVCGHETLMYD-LDK 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,145
Number of Sequences: 28952
Number of extensions: 270711
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)