Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0374
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    76   3e-16
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.9  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   4.3  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   4.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.7  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.6  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 76.2 bits (179), Expect = 3e-16
 Identities = 35/40 (87%), Positives = 36/40 (90%)
 Frame = +1

Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPG 375
           RVETGVLKPG +VVFAPANITTEVKSV MHHE L EAVPG
Sbjct: 17  RVETGVLKPGMVVVFAPANITTEVKSVEMHHEALPEAVPG 56



 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +2

Query: 209 LQDVYKIGGIGTMPVAELK 265
           LQDVYKIGGIGT+PV  ++
Sbjct: 1   LQDVYKIGGIGTVPVGRVE 19


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 321 SSDVGGGKDNNGTWFQHTSF 262
           ++ V GG +NNGT   H+ F
Sbjct: 182 AAQVSGGNNNNGTPGGHSGF 201


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 259 LCDGHGTNTTDFVYVLQ 209
           LC   GT TT F+ +LQ
Sbjct: 356 LCGIFGTTTTYFIVILQ 372


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 259 LCDGHGTNTTDFVYVLQ 209
           LC   GT TT F+ +LQ
Sbjct: 356 LCGIFGTTTTYFIVILQ 372


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 253 RRVETGVLKPGTIVVFAPANITTEVKS 333
           R  ETG ++PG I    P   T EV++
Sbjct: 93  RYQETGSIRPGVIGGSKPRVATPEVEN 119


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 363 FLESFVVHIHRLDFSSDVG 307
           FLE  + H  R  FSS VG
Sbjct: 68  FLEMTLAHHCRFKFSSSVG 86


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 493 IVLNHLVKSQTVTHQ 537
           I+++HLV  Q++ HQ
Sbjct: 257 IMMHHLVNPQSLNHQ 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,523
Number of Sequences: 336
Number of extensions: 4541
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)