Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0374
(718 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 146 2e-35
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 37 0.014
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 29 5.0
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39) 28 6.6
SB_12293| Best HMM Match : OATP (HMM E-Value=0) 28 8.7
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 146 bits (353), Expect = 2e-35
Identities = 66/84 (78%), Positives = 75/84 (89%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
RVETGVLKPGT+V F+P+NITTEVKSV MHHE+L EA+PGDNVGFNVKNVSVK+++RG V
Sbjct: 125 RVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNV 184
Query: 436 AGDSKNNPPKGAADFTAQVIVLNH 507
AGD KNNPPK FTAQVIV+NH
Sbjct: 185 AGDFKNNPPKPCKSFTAQVIVMNH 208
Score = 113 bits (271), Expect = 2e-25
Identities = 47/69 (68%), Positives = 59/69 (85%)
Frame = +3
Query: 510 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPL 689
G+I GY+PVLDCHTAHIACKF ++ EK+DRR+GK E NPK IK+GDAA+V ++PSKP+
Sbjct: 210 GEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPM 269
Query: 690 CVESFQEFP 716
CVE+F EFP
Sbjct: 270 CVETFTEFP 278
Score = 92.7 bits (220), Expect = 3e-19
Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 6/75 (8%)
Frame = +2
Query: 59 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 220
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP+ PLRLPLQDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 221 YKIGGIGTMPVAELK 265
YKIGGIGT+PV ++
Sbjct: 113 YKIGGIGTVPVGRVE 127
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 37.1 bits (82), Expect = 0.014
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +3
Query: 507 SGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 686
SG I+ G T VL + IA +D++TGK + P+ IK AI L
Sbjct: 475 SGTINKGQTLVLMPNKRLIAL--------IDKKTGKKGQTRPRFIKQDQIAIARLETQGV 526
Query: 687 LCVESFQEF 713
+C+E F +F
Sbjct: 527 ICIEKFSDF 535
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +3
Query: 558 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 686
HIA K E+K D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 31.1 bits (67), Expect = 0.93
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -1
Query: 646 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSK 539
DL +F G+T++ LP ST + NLQ W +WQSK
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494
>SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -3
Query: 419 NSLTDTFFTLKPTLSPGTASWRVSWCIFTDLTSVVMLAGAKTTMVPGFNTPVSTLRRAWY 240
N T T T PT++P + +S I SV+++AG +V TP +RA+Y
Sbjct: 2 NLTTVTPSTTTPTVTPSDRQYFLSKVISYAAVSVLIIAGNLLCLVVFLRTPQMRRKRAYY 61
>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 28.7 bits (61), Expect = 5.0
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Frame = +3
Query: 66 WSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAP---LTSPCVF---PCKTYTK 227
++L+P+C R R+ +R + + P C+ P + PC + PC+ YT
Sbjct: 179 YTLRPRCYTLRPCRYMLRPCRYMLRPCRYMLRPCCYTLRPCRYMLRPCRYTLRPCR-YT- 236
Query: 228 SVVLVPCPSQS*NWCVETRYHCCLCPRQHHY*SQVCEYAPRNSPRSCTWRQCRF 389
L PC + C T C R Y + C Y R P T R CR+
Sbjct: 237 ---LRPC-RYTLRPCRYTLRPCRYTLRPCGYTLRPCGYTLR--PHRYTLRPCRY 284
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 579 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 707
EI R TG++TE+N ++ SG+ I +V + C+ Q
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQ 297
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 6.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 47 WHGDNMLEPSTKMPWFKGWQVERKE 121
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 579 LQICRQCGQCGNPRLVCNRLRFDQMVKHNDLSCKICS 469
L +C QCGQC +P C ++ ++M+ C C+
Sbjct: 767 LIVCSQCGQCFHP--YCVGVKVNKMILSKGWRCLDCT 801
>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
Length = 2865
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 300 KDNNGTWFQHTSFNSATGMVPIP 232
K N G W+QH S NS+ V P
Sbjct: 99 KKNGGDWYQHESLNSSPRPVQTP 121
>SB_12293| Best HMM Match : OATP (HMM E-Value=0)
Length = 1446
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 314 MLAGAKTTMVPGFNTPVSTLRRAWY 240
++ G KT+ + G N P R AW+
Sbjct: 791 LIPGCKTSQIAGINAPYGNNRMAWF 815
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 519 SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 686
+N P+L+ T +A K D T + +VN KS G +I+ P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,661,484
Number of Sequences: 59808
Number of extensions: 629390
Number of successful extensions: 1981
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1980
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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