Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0374
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 153 1e-37
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 153 1e-37
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 153 1e-37
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 53 2e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 36 0.038
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 35 0.051
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 35 0.051
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 35 0.051
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 32 0.47
AF016655-9|AAK31440.1| 348|Caenorhabditis elegans Hypothetical ... 30 1.9
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 5.8
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 5.8
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 5.8
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 7.7
U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical pr... 28 7.7
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 153 bits (371), Expect = 1e-37
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = +2
Query: 2 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPAR 181
IGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP R
Sbjct: 147 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQR 206
Query: 182 PTDKPLRLPLQDVYKIGGIGTMPVAELK 265
PTD+PLRLPLQDVYKIGGIGT+PV ++
Sbjct: 207 PTDRPLRLPLQDVYKIGGIGTVPVGRVE 234
Score = 133 bits (322), Expect = 1e-31
Identities = 60/84 (71%), Positives = 70/84 (83%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
RVETG++KPG +V FAP N+TTEVKSV MHHE+L EAVPGDNVGFNVKNVSVK++RRG V
Sbjct: 232 RVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSV 291
Query: 436 AGDSKNNPPKGAADFTAQVIVLNH 507
DSK +P K A F AQVI++NH
Sbjct: 292 CSDSKQDPAKEARTFHAQVIIMNH 315
Score = 120 bits (289), Expect = 1e-27
Identities = 53/68 (77%), Positives = 59/68 (86%)
Frame = +3
Query: 510 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPL 689
GQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPL
Sbjct: 317 GQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPL 376
Query: 690 CVESFQEF 713
CVESF ++
Sbjct: 377 CVESFTDY 384
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 153 bits (371), Expect = 1e-37
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = +2
Query: 2 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPAR 181
IGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP R
Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQR 240
Query: 182 PTDKPLRLPLQDVYKIGGIGTMPVAELK 265
PTD+PLRLPLQDVYKIGGIGT+PV ++
Sbjct: 241 PTDRPLRLPLQDVYKIGGIGTVPVGRVE 268
Score = 133 bits (322), Expect = 1e-31
Identities = 60/84 (71%), Positives = 70/84 (83%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
RVETG++KPG +V FAP N+TTEVKSV MHHE+L EAVPGDNVGFNVKNVSVK++RRG V
Sbjct: 266 RVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSV 325
Query: 436 AGDSKNNPPKGAADFTAQVIVLNH 507
DSK +P K A F AQVI++NH
Sbjct: 326 CSDSKQDPAKEARTFHAQVIIMNH 349
Score = 120 bits (289), Expect = 1e-27
Identities = 53/68 (77%), Positives = 59/68 (86%)
Frame = +3
Query: 510 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPL 689
GQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPL
Sbjct: 351 GQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPL 410
Query: 690 CVESFQEF 713
CVESF ++
Sbjct: 411 CVESFTDY 418
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 153 bits (371), Expect = 1e-37
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = +2
Query: 2 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPAR 181
IGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP R
Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQR 240
Query: 182 PTDKPLRLPLQDVYKIGGIGTMPVAELK 265
PTD+PLRLPLQDVYKIGGIGT+PV ++
Sbjct: 241 PTDRPLRLPLQDVYKIGGIGTVPVGRVE 268
Score = 133 bits (322), Expect = 1e-31
Identities = 60/84 (71%), Positives = 70/84 (83%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
RVETG++KPG +V FAP N+TTEVKSV MHHE+L EAVPGDNVGFNVKNVSVK++RRG V
Sbjct: 266 RVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSV 325
Query: 436 AGDSKNNPPKGAADFTAQVIVLNH 507
DSK +P K A F AQVI++NH
Sbjct: 326 CSDSKQDPAKEARTFHAQVIIMNH 349
Score = 120 bits (289), Expect = 1e-27
Identities = 53/68 (77%), Positives = 59/68 (86%)
Frame = +3
Query: 510 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPL 689
GQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPL
Sbjct: 351 GQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPL 410
Query: 690 CVESFQEF 713
CVESF ++
Sbjct: 411 CVESFTDY 418
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/70 (44%), Positives = 35/70 (50%)
Frame = +3
Query: 45 DGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYT 224
D TETTC C GSRDG + RK L E S +L PS H A LT VF + T
Sbjct: 178 DSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCT 237
Query: 225 KSVVLVPCPS 254
+S L P S
Sbjct: 238 RSEELEPSQS 247
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = +2
Query: 29 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLP 208
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+
Sbjct: 350 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 396
Query: 209 LQDVYKI 229
+ DV K+
Sbjct: 397 ISDVLKV 403
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = +2
Query: 29 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLP 208
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+
Sbjct: 368 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 414
Query: 209 LQDVYKI 229
+ DV K+
Sbjct: 415 ISDVLKV 421
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
++E+G ++ G +V P +V + + V GDN+ F +K + EL+ G++
Sbjct: 358 KMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFI 417
Query: 436 AGDSKNNPPKGAADFTAQVIVLNH 507
S ++ K F A+V+VL H
Sbjct: 418 I-CSPDSLAKTGRVFDAEVLVLEH 440
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 35.5 bits (78), Expect = 0.038
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Frame = +1
Query: 235 YWYHARRRVETGVLKPGTI-----VVFAPAN----ITTEVKSVNMHHETLQEAVPGDNVG 387
YW + +G L GTI ++ P + + +KS++ + G +
Sbjct: 381 YWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCGQSAS 440
Query: 388 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 507
F +K + K++R+G V D K P F A+++VL+H
Sbjct: 441 FALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHH 479
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 35.1 bits (77), Expect = 0.051
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 256 RVETGVLKPGT-IVVFAPANITTEVKSV----NMHHETLQEAVPGDNVGFNVKNVSVKEL 420
++E G+LK G I + T VKSV +T+ +A PGD +G ++ + K++
Sbjct: 272 KLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDV 331
Query: 421 RRGYV 435
RRG V
Sbjct: 332 RRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 35.1 bits (77), Expect = 0.051
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 256 RVETGVLKPGT-IVVFAPANITTEVKSV----NMHHETLQEAVPGDNVGFNVKNVSVKEL 420
++E G+LK G I + T VKSV +T+ +A PGD +G ++ + K++
Sbjct: 273 KLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDV 332
Query: 421 RRGYV 435
RRG V
Sbjct: 333 RRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 35.1 bits (77), Expect = 0.051
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 256 RVETGVLKPGT-IVVFAPANITTEVKSV----NMHHETLQEAVPGDNVGFNVKNVSVKEL 420
++E G+LK G I + T VKSV +T+ +A PGD +G ++ + K++
Sbjct: 273 KLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDV 332
Query: 421 RRGYV 435
RRG V
Sbjct: 333 RRGCV 337
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 277 KPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKN 402
KPGTI F P ITTE K H TL+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>AF016655-9|AAK31440.1| 348|Caenorhabditis elegans Hypothetical
protein C17F4.5 protein.
Length = 348
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 434 LLVTPKTTHLRVLQILQLKSLCLTIWSNLKRLHTSL 541
LL+ P + L+ + L++K+LCLTI SN+ + SL
Sbjct: 112 LLLIPNSEVLKFPESLKVKALCLTIQSNVASVMGSL 147
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +1
Query: 268 GVLKPGTIVVFAPANITT----EVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
G L G V+ P T V S+ + + PG+ ++ LRRG V
Sbjct: 427 GQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMV 486
Query: 436 AGDSKNNPPKGAADFTAQVIVLNHLVK 516
+ + PP +FTA +++L H K
Sbjct: 487 LAEIDHQPPV-CYEFTANLLLLCHSTK 512
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 540 LDCHTAHIACKFAEIKEKVDRRTGKSTE 623
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 540 LDCHTAHIACKFAEIKEKVDRRTGKSTE 623
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 540 LDCHTAHIACKFAEIKEKVDRRTGKSTE 623
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 491 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 360
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
>U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical
protein F28B4.2 protein.
Length = 860
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 321 SSDVGGGKDNNGTWFQHTSFNSATGMVPIPPI 226
+S+ G + NGTW QH+ S++ IP I
Sbjct: 540 TSEDSGSHNGNGTWHQHSHSYSSSTNSQIPSI 571
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,313,788
Number of Sequences: 27780
Number of extensions: 453304
Number of successful extensions: 1409
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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