Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0374
(718 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 138 3e-33
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 138 3e-33
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 138 3e-33
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 138 3e-33
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 97 1e-20
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 46 3e-05
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 38 0.005
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 38 0.007
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 36 0.027
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co... 32 0.33
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 31 1.0
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 31 1.0
At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ... 30 1.8
At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma mem... 29 2.3
At4g27900.2 68417.m04005 expressed protein 29 4.1
At4g27900.1 68417.m04004 expressed protein 29 4.1
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 29 4.1
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 5.4
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi... 28 5.4
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi... 28 7.1
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi... 28 7.1
At1g01060.2 68414.m00007 myb family transcription factor contain... 27 9.4
At1g01060.1 68414.m00006 myb family transcription factor contain... 27 9.4
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 138 bits (334), Expect = 3e-33
Identities = 60/84 (71%), Positives = 76/84 (90%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
RVETG++KPG +V FAP +TTEVKSV MHHE+L EA+PGDNVGFNVKNV+VK+L+RGYV
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYV 313
Query: 436 AGDSKNNPPKGAADFTAQVIVLNH 507
A +SK++P KGAA+FT+QVI++NH
Sbjct: 314 ASNSKDDPAKGAANFTSQVIIMNH 337
Score = 102 bits (245), Expect = 2e-22
Identities = 50/88 (56%), Positives = 61/88 (69%)
Frame = +2
Query: 2 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPAR 181
+GYNP + FVPISG+ GDNM+E ST + W+KG L+EALD I P R
Sbjct: 181 VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKR 228
Query: 182 PTDKPLRLPLQDVYKIGGIGTMPVAELK 265
P+DKPLRLPLQDVYKIGGIGT+PV ++
Sbjct: 229 PSDKPLRLPLQDVYKIGGIGTVPVGRVE 256
Score = 102 bits (245), Expect = 2e-22
Identities = 46/87 (52%), Positives = 58/87 (66%)
Frame = +3
Query: 456 PT*GCCRFYSSSHCA*PSGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 635
P G F S GQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK
Sbjct: 321 PAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380
Query: 636 SIKSGDAAIVNLVPSKPLCVESFQEFP 716
+K+GDA +V + P+KP+ VE+F E+P
Sbjct: 381 FLKNGDAGMVKMTPTKPMVVETFSEYP 407
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 138 bits (334), Expect = 3e-33
Identities = 60/84 (71%), Positives = 76/84 (90%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
RVETG++KPG +V FAP +TTEVKSV MHHE+L EA+PGDNVGFNVKNV+VK+L+RGYV
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYV 313
Query: 436 AGDSKNNPPKGAADFTAQVIVLNH 507
A +SK++P KGAA+FT+QVI++NH
Sbjct: 314 ASNSKDDPAKGAANFTSQVIIMNH 337
Score = 102 bits (245), Expect = 2e-22
Identities = 50/88 (56%), Positives = 61/88 (69%)
Frame = +2
Query: 2 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPAR 181
+GYNP + FVPISG+ GDNM+E ST + W+KG L+EALD I P R
Sbjct: 181 VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKR 228
Query: 182 PTDKPLRLPLQDVYKIGGIGTMPVAELK 265
P+DKPLRLPLQDVYKIGGIGT+PV ++
Sbjct: 229 PSDKPLRLPLQDVYKIGGIGTVPVGRVE 256
Score = 102 bits (245), Expect = 2e-22
Identities = 46/87 (52%), Positives = 58/87 (66%)
Frame = +3
Query: 456 PT*GCCRFYSSSHCA*PSGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 635
P G F S GQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK
Sbjct: 321 PAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380
Query: 636 SIKSGDAAIVNLVPSKPLCVESFQEFP 716
+K+GDA +V + P+KP+ VE+F E+P
Sbjct: 381 FLKNGDAGMVKMTPTKPMVVETFSEYP 407
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 138 bits (334), Expect = 3e-33
Identities = 60/84 (71%), Positives = 76/84 (90%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
RVETG++KPG +V FAP +TTEVKSV MHHE+L EA+PGDNVGFNVKNV+VK+L+RGYV
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYV 313
Query: 436 AGDSKNNPPKGAADFTAQVIVLNH 507
A +SK++P KGAA+FT+QVI++NH
Sbjct: 314 ASNSKDDPAKGAANFTSQVIIMNH 337
Score = 102 bits (245), Expect = 2e-22
Identities = 50/88 (56%), Positives = 61/88 (69%)
Frame = +2
Query: 2 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPAR 181
+GYNP + FVPISG+ GDNM+E ST + W+KG L+EALD I P R
Sbjct: 181 VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKR 228
Query: 182 PTDKPLRLPLQDVYKIGGIGTMPVAELK 265
P+DKPLRLPLQDVYKIGGIGT+PV ++
Sbjct: 229 PSDKPLRLPLQDVYKIGGIGTVPVGRVE 256
Score = 102 bits (245), Expect = 2e-22
Identities = 46/87 (52%), Positives = 58/87 (66%)
Frame = +3
Query: 456 PT*GCCRFYSSSHCA*PSGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 635
P G F S GQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK
Sbjct: 321 PAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380
Query: 636 SIKSGDAAIVNLVPSKPLCVESFQEFP 716
+K+GDA +V + P+KP+ VE+F E+P
Sbjct: 381 FLKNGDAGMVKMTPTKPMVVETFSEYP 407
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 138 bits (334), Expect = 3e-33
Identities = 60/84 (71%), Positives = 76/84 (90%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
RVETG++KPG +V FAP +TTEVKSV MHHE+L EA+PGDNVGFNVKNV+VK+L+RGYV
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYV 313
Query: 436 AGDSKNNPPKGAADFTAQVIVLNH 507
A +SK++P KGAA+FT+QVI++NH
Sbjct: 314 ASNSKDDPAKGAANFTSQVIIMNH 337
Score = 102 bits (245), Expect = 2e-22
Identities = 50/88 (56%), Positives = 61/88 (69%)
Frame = +2
Query: 2 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPAR 181
+GYNP + FVPISG+ GDNM+E ST + W+KG L+EALD I P R
Sbjct: 181 VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKR 228
Query: 182 PTDKPLRLPLQDVYKIGGIGTMPVAELK 265
P+DKPLRLPLQDVYKIGGIGT+PV ++
Sbjct: 229 PSDKPLRLPLQDVYKIGGIGTVPVGRVE 256
Score = 102 bits (245), Expect = 2e-22
Identities = 46/87 (52%), Positives = 58/87 (66%)
Frame = +3
Query: 456 PT*GCCRFYSSSHCA*PSGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 635
P G F S GQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK
Sbjct: 321 PAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPK 380
Query: 636 SIKSGDAAIVNLVPSKPLCVESFQEFP 716
+K+GDA +V + P+KP+ VE+F E+P
Sbjct: 381 FLKNGDAGMVKMTPTKPMVVETFSEYP 407
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 96.7 bits (230), Expect = 1e-20
Identities = 40/69 (57%), Positives = 53/69 (76%)
Frame = +3
Query: 510 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPL 689
GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P+KP+
Sbjct: 5 GQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPM 64
Query: 690 CVESFQEFP 716
VE++ +P
Sbjct: 65 VVEAYSAYP 73
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 525 GYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESF 704
GY +L H C+ E+K ++D +T K + +K+G A + + + +C+E F
Sbjct: 440 GYKAILHIHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKF 499
Query: 705 QEFP 716
+FP
Sbjct: 500 SDFP 503
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/85 (24%), Positives = 43/85 (50%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
+VE+G ++ G +V P +V ++ + ++ A PG+N+ + + +++ G+V
Sbjct: 349 KVESGSIREGDSLVVMPNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFV 408
Query: 436 AGDSKNNPPKGAADFTAQVIVLNHL 510
S NP +F AQ+ +L L
Sbjct: 409 L-SSIVNPVPAVTEFVAQLQILELL 432
Score = 34.7 bits (76), Expect = 0.062
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +2
Query: 5 GYNPAA-VAFVPISGWHGDNMLEPSTK--MPWFKGWQVERKEGKADGKCLIEALDAILPP 175
GYN V F+PISG G NM + + PW W G E LD+I P
Sbjct: 276 GYNTKKDVVFLPISGLMGKNMDQRMGQEICPW---W---------SGPSFFEVLDSIEIP 323
Query: 176 ARPTDKPLRLPLQDVYKIGGIGTMPVAE 259
R + P R+P+ D +K G M E
Sbjct: 324 PRDPNGPFRMPIIDKFKDMGTVVMGKVE 351
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 247 ARRRVETGVLKPGTIVVFAPANITTE--VKSVNMHHETLQEAVPGDNVGFNVKNVSVKEL 420
A RVE G +K G V T V V M + L EA+ GDNVG ++ + ++
Sbjct: 305 ATGRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGDNVGLLLRGIQKADI 364
Query: 421 RRGYV 435
+RG V
Sbjct: 365 QRGMV 369
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 143 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTMPVAELK 265
L++A+D +P P R T+ P L ++DV+ I G GT+ ++
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVE 310
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 143 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTMPVAELK 265
L++A+D +P P R DKP +P++DV+ I G GT+ ++
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIE 290
Score = 33.5 bits (73), Expect = 0.14
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +1
Query: 247 ARRRVETGVLKPGTIVVFAPAN-----ITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSV 411
A R+E GV+K G V + + V V M + L GDNVG ++ +
Sbjct: 285 ATGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKR 344
Query: 412 KELRRGYVAGDSKNNPPKGAADFTAQVIVL 501
++++RG V +K K F A++ VL
Sbjct: 345 EDIQRGMVI--AKPGSCKTYKKFEAEIYVL 372
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +3
Query: 549 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQE 710
H A A ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F E
Sbjct: 586 HHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSE 639
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 134 GKCLIEALDAILPPARPTDKPLRLPLQDVYK 226
G CL++A+D++ P R KPL +P+ D +
Sbjct: 447 GPCLLDAVDSVKSPDRDVSKPLLMPICDAVR 477
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 256 RVETGVLKPGTIVVFAPANITTEVKSVNMHHETLQEAVPGDNVGFNVKNVSVKELRRGYV 435
++E G ++PG+ V+ P+ ++S+ + A GDNV ++ + ++ G V
Sbjct: 489 KLEAGAVRPGSKVMVMPSGDQGTIRSLERDSQACTIARAGDNVALALQGIDANQVMAGDV 548
>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1611
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 325 VKSVNMHHETLQEAVPGDNVGFNV-KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 501
++S + ET D+VG N+ +V+ E+ + VA S + PP + + V
Sbjct: 754 IESCVRYSETNASLAGSDDVGMNLLASVAADEMSKSPVASPSVSQPPNSLMNENSTVGNN 813
Query: 502 NHLVKSQTVTHQSWIATLPTL 564
L+ S + H+ A PTL
Sbjct: 814 TKLMASDGLPHKQHQAVRPTL 834
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 249 PSQS*NWCVETRYHCCLCPRQHHY*SQVCE 338
P+ + C R+HC LC R+ +Y S CE
Sbjct: 66 PNHTLELCSNLRFHCDLCGRRTNYLSYYCE 95
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 116 KEGKADGKCLIEALDAILPPARPTDKP 196
KE +A G + +ALD +PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 214
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = -2
Query: 303 GKDNNGTWFQHTSFNSATGMVPIPPILYTSCRGRRRGLSVGRAGGRM----ASRASMRHF 136
G +N H N G++P PP YT RR S GG M RA +R
Sbjct: 23 GNGDNRVIMNHYK-NYEAGLIPWPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQI 81
Query: 135 PSAL 124
PS L
Sbjct: 82 PSWL 85
>At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA10)
identical to SP|Q9SZR1 Potential calcium-transporting
ATPase 10, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 10) {Arabidopsis thaliana};
similar to SP|Q9LF79 Calcium-transporting ATPase 8,
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
8) {Arabidopsis thaliana}
Length = 1069
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 371 GTASWRVSWCIFTDLTSVVMLAGAKTTMVPGFNTPVSTLRRAWY 240
G + WR W DLT ++++ A ++ G T + + WY
Sbjct: 178 GRSFWRFVWEASQDLTLIILIVAAVASLALGIKT--EGIEKGWY 219
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 630 PKSIKSGDAAIVNLVPSKPLCVESFQEFP 716
PKS+ SG+ + +++V K ++ F +FP
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFP 172
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 630 PKSIKSGDAAIVNLVPSKPLCVESFQEFP 716
PKS+ SG+ + +++V K ++ F +FP
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFP 172
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 65 LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 163
++ T W KG++V EGK CL EA++A
Sbjct: 189 IDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 570 KFAEIKEKVDRRTGKSTEVNPKSI 641
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 747
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 1 DWLQPSCCRFRAHFWMARRQHVGAFNQNALVQGM 102
DW+ C AHF RR +GAF A G+
Sbjct: 687 DWVNCGSCGEWAHFGCDRRPGLGAFKDYAKTDGL 720
>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 39 FLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKT 218
FL+G+ T+ C+ S D ++ +L + A PS LP P C+ P +
Sbjct: 18 FLNGSRTSVTDGN-SCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEV 76
Query: 219 YTKSVV 236
TK VV
Sbjct: 77 -TKPVV 81
>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 39 FLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKT 218
FL+G+ T+ C+ S D ++ +L + A PS LP P C+ P +
Sbjct: 18 FLNGSRTSVTDGN-SCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEV 76
Query: 219 YTKSVV 236
TK VV
Sbjct: 77 -TKPVV 81
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 116 KEGKADGKCLIEALDAILPPARPTDKP 196
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 116 KEGKADGKCLIEALDAILPPARPTDKP 196
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,521,542
Number of Sequences: 28952
Number of extensions: 426592
Number of successful extensions: 1337
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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