Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0373
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   101   7e-23
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   100   1e-22
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   1.3  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.8  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.3  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   3.1  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   4.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   5.4  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   7.2  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   9.5  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  101 bits (242), Expect = 7e-23
 Identities = 49/78 (62%), Positives = 61/78 (78%)
 Frame = +2

Query: 257 SIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN 436
           +++EIRNFLGE+  R +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+N
Sbjct: 108 TVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRN 167

Query: 437 KDIRKFLDGLYVSEKTTV 490
           KDIRKFLDG+YVSE+  +
Sbjct: 168 KDIRKFLDGIYVSERGNI 185



 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 45/83 (54%), Positives = 58/83 (69%)
 Frame = +3

Query: 3   RLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGV 182
           RLVTVKGPRGVLK+N + + ++++      +K   W GS+K  A +RT  S + NMI GV
Sbjct: 24  RLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRKHNACIRTAYSIINNMIIGV 82

Query: 183 TKGFQYKMRAVYAHFPINCVTTE 251
           T+GF+YKMR VYAHFPIN   TE
Sbjct: 83  TQGFRYKMRLVYAHFPININLTE 105


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  100 bits (240), Expect = 1e-22
 Identities = 48/78 (61%), Positives = 61/78 (78%)
 Frame = +2

Query: 257 SIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN 436
           +++EIRNFLGE+  R +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+N
Sbjct: 108 TVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRN 167

Query: 437 KDIRKFLDGLYVSEKTTV 490
           KDIRKFLDG+YVSE+  +
Sbjct: 168 KDIRKFLDGIYVSERGNI 185



 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 43/83 (51%), Positives = 57/83 (68%)
 Frame = +3

Query: 3   RLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGV 182
           R VTV GPRG LK+N +H+ ++++      +K   W GS+K  A +R+V S + NMI GV
Sbjct: 24  RNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNACIRSVYSIINNMIIGV 82

Query: 183 TKGFQYKMRAVYAHFPINCVTTE 251
           T+GF+YKMR VYAHFPIN   TE
Sbjct: 83  TQGFRYKMRLVYAHFPININLTE 105


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +2

Query: 380 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDDI 505
           + D+S+SA    + T + N+++ K  +GL+++ +T+  LD I
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS-FLDGI 118


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 335 NSPKQKDELIIEGNSLEDVSSSAALIQQS 421
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 48   FKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 185
            F H +VD+ +    L + E WF        + T+CS + N++  VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 149 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 3
           D P+G     GS  F+      V+H+N N+   ++  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 493 HNSCFLRYIKTIQELSDILILD 428
           H S  L Y KT++E++ + I+D
Sbjct: 796 HQSSLLPYFKTLKEIAHLFIID 817


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 143 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 21
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 133 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 23
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 484  CFLRYIKTIQELSDILILDCSRLLDESSRARDIFQRVAF 368
            C    IKTI +   +L+LD  + ++  S      QR AF
Sbjct: 1378 CIAHRIKTIVDYDKVLVLDSGKTVEFGSPKSLYTQRRAF 1416


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 326  TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN 436
            +V+N    K EL +EG  L+ V ++  ++   T+  +
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,924
Number of Sequences: 5004
Number of extensions: 42450
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)