Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0373
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    109   2e-24
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   107   6e-24
05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498...    29   3.1  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   7.2  
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491...    27   7.2  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  109 bits (261), Expect = 2e-24
 Identities = 48/83 (57%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
 Frame = +3

Query: 3   RLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKELAAVRTVCSHVENMIKG 179
           ++VTV+GPRG L RNFKHL +D +++   R L+V+ WFG+++ +AA+RT  SHV+N+I G
Sbjct: 23  KVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITG 82

Query: 180 VTKGFQYKMRAVYAHFPINCVTT 248
           VTKG++YKMR VYAHFPIN   T
Sbjct: 83  VTKGYRYKMRFVYAHFPINASIT 105



 Score =  106 bits (255), Expect = 1e-23
 Identities = 51/79 (64%), Positives = 62/79 (78%)
 Frame = +2

Query: 263 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 442
           IEIRNFLGEK +R+V M  GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKD
Sbjct: 111 IEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKD 170

Query: 443 IRKFLDGLYVSEKTTVVLD 499
           IRKFLDG+YVS+K T+  D
Sbjct: 171 IRKFLDGIYVSDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  107 bits (257), Expect = 6e-24
 Identities = 48/85 (56%), Positives = 66/85 (77%), Gaps = 3/85 (3%)
 Frame = +3

Query: 3   RLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELAAVRTVCSHVENMI 173
           ++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +AA+RT  SHV+N+I
Sbjct: 14  KVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTAISHVQNLI 73

Query: 174 KGVTKGFQYKMRAVYAHFPINCVTT 248
            GVTKG++YKMR VYAHFPIN   T
Sbjct: 74  TGVTKGYRYKMRFVYAHFPINASIT 98



 Score =  106 bits (255), Expect = 1e-23
 Identities = 51/79 (64%), Positives = 62/79 (78%)
 Frame = +2

Query: 263 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 442
           IEIRNFLGEK +R+V M  GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKD
Sbjct: 104 IEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKD 163

Query: 443 IRKFLDGLYVSEKTTVVLD 499
           IRKFLDG+YVS+K T+  D
Sbjct: 164 IRKFLDGIYVSDKGTITED 182


>05_06_0120 +
           25748882-25749297,25749411-25749600,25749682-25749888,
           25750234-25750401,25751155-25751390,25751617-25751764
          Length = 454

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 177 GVTKGFQYKMRAVYAHFPINCVTTEGIQLLRYVTSWVRN 293
           G TKG +    A   ++P+N    E I+  R  T WVR+
Sbjct: 41  GHTKGLRPGKAAAKPYYPVNATAVEAIE--RQFTRWVRS 77


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 33  VLKRNF-KHLAVDIRMVNPRLLKVE 104
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


>02_05_0967 -
           33148283-33148524,33148602-33148881,33148959-33149151,
           33149244-33149324,33149395-33149520,33149758-33150137,
           33150367-33150394,33150816-33150979,33151920-33152039,
           33152168-33152416
          Length = 620

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
 Frame = +2

Query: 254 YSIIEIRNF-----LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 418
           Y + +++N+     + +K I+ +K++PG+ +V   K  + + ++  S+ED +      Q 
Sbjct: 358 YKVFDLKNYNFLYSICDKNIQEIKISPGIMLVIYQKSANHVPLKILSIEDGTPLKTFTQL 417

Query: 419 STTVKNKD-IRKFLDGLYV-SEKTTVVLDDI*N 511
               +  D I +F + L V  +K  + + D+ N
Sbjct: 418 LHRSRKVDFIEQFNEKLLVKQDKENLQIIDVRN 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,662,826
Number of Sequences: 37544
Number of extensions: 267470
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)