Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0373
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        113   9e-26
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   3e-09
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               33   0.20 
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 31   0.79 
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.79 
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_22208| Best HMM Match : PAAR_motif (HMM E-Value=0.005)              28   5.6  
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)               28   5.6  
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)                   28   5.6  
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  113 bits (272), Expect = 9e-26
 Identities = 49/83 (59%), Positives = 64/83 (77%)
 Frame = +3

Query: 3   RLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGV 182
           R+VTV GPRG LKRNF+HL +++  V    ++V+ WF S+KELA V+T+ +H+ENMIKGV
Sbjct: 579 RVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFASRKELACVKTIITHIENMIKGV 638

Query: 183 TKGFQYKMRAVYAHFPINCVTTE 251
             G++YKMRAVYAHFPIN    E
Sbjct: 639 IYGYRYKMRAVYAHFPINIAIQE 661



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/21 (66%), Positives = 20/21 (95%)
 Frame = +2

Query: 257 SIIEIRNFLGEKYIRRVKMAP 319
           +++E+RNFLGEKY+RRV+M P
Sbjct: 664 TLVEVRNFLGEKYVRRVRMRP 684


>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +2

Query: 404 ALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 493
           ALIQQST VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 2   ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
 Frame = +2

Query: 251 GYSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 424
           G  ++ +++ LG++    +      T +       K+EL    +SLE+VS   A +Q S 
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255

Query: 425 TVKNKDIRKFLDGLYVSEKTTV----VLDDI*NI 514
             K+++I      L V+EK  +     L+DI N+
Sbjct: 256 LTKDEEISSLTKRLQVTEKKGIEQVASLNDIVNV 289


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +2

Query: 290 KYIRRVKMAPGVTVVNSPKQKDELIIE-GNSLEDVSSSAALIQQSTTVKNKDIRKFLDGL 466
           K   R ++A G+   ++P Q + LI   G   EDV S+ +L +  +      + KF DG 
Sbjct: 25  KRFERFRIASGLDKKDAPSQINALIYTMGERAEDVLSTFSLTEAESKDYKVVVEKF-DGH 83

Query: 467 YVSEKTTV 490
           +V ++ T+
Sbjct: 84  FVKKRNTI 91


>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 456 KNFLISLFLTVVDCWMRAAELETSSKELPSMISSSFCFGELTTV 325
           K+F+  +   +VDCW+ +   E S+  LPS   S   F  +TTV
Sbjct: 298 KDFIGRIVPLLVDCWIESNPAEMST-SLPSSSISPVAFSTMTTV 340


>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -3

Query: 278 SYVSQ*LNTLSGDTVNGEVSIHSTHLVLEAFSYSFNHVL 162
           SY+S  L +LSG+ + G+V  HS  ++L  +S   N+VL
Sbjct: 94  SYISPLLASLSGEQLPGKVIAHSGQMLLNLYS-DTNYVL 131


>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 98  LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 6
           L  TR+ +  V+S   EV  E S  P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 151 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 8
           QT++T A  F D       RRR F+  +S   C + L R+P  P++ T
Sbjct: 85  QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130


>SB_22208| Best HMM Match : PAAR_motif (HMM E-Value=0.005)
          Length = 316

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 353 DELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKT-TVVLDD 502
           D  ++EG+ +  V S AA++++   V N      +DG  V+    +++LDD
Sbjct: 169 DAAVVEGDKVVVVDSDAAVVERDKVVVNDSDAAVVDGDEVAVVAWSLILDD 219


>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
          Length = 535

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +2

Query: 296 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVS 475
           I+      GV V++  K   E + + +  E    +  L Q  T + N+ +RK     ++ 
Sbjct: 276 IKEADKGSGVVVMDKDKYNQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSSDGFID 335

Query: 476 EKT 484
           +KT
Sbjct: 336 DKT 338


>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
          Length = 309

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 375 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 256
           +P  I S    G+L  +T G I T      PKKL   +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257


>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +2

Query: 272 RNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRK 451
           R  L +  I+      GV V++  K   E + + +  E    +  L Q  T + N+ +RK
Sbjct: 159 RRALKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRK 218

Query: 452 FLDGLYVSEKT 484
                ++ +KT
Sbjct: 219 LSADGFIDDKT 229


>SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +2

Query: 272 RNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRK 451
           R  L +  I+      GV V++  K   E + + +  E    +  L Q  T + N+ +RK
Sbjct: 157 RRALKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRK 216

Query: 452 FLDGLYVSEKT 484
                ++ +KT
Sbjct: 217 LSADGFIDDKT 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,148,996
Number of Sequences: 59808
Number of extensions: 316632
Number of successful extensions: 678
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)