Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0373
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   119   2e-27
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    31   0.40 
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    31   0.53 
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    28   4.9  
AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    28   4.9  
AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  119 bits (286), Expect = 2e-27
 Identities = 49/84 (58%), Positives = 67/84 (79%)
 Frame = +3

Query: 3   RLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGV 182
           R+V V GPRG ++++F+HL +++  +    L+V KWFG +KELAA+RTVCSH++NMIKGV
Sbjct: 23  RIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGV 82

Query: 183 TKGFQYKMRAVYAHFPINCVTTEG 254
           T GF+YKMR+VYAHFPIN    +G
Sbjct: 83  TVGFRYKMRSVYAHFPINVTLQDG 106



 Score =  108 bits (260), Expect = 2e-24
 Identities = 52/84 (61%), Positives = 63/84 (75%)
 Frame = +2

Query: 251 GYSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTV 430
           G   +EIRNFLGEK +RRV +  GV    S  QKDE+++EGN ++ VS +AA IQQST V
Sbjct: 106 GNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAV 165

Query: 431 KNKDIRKFLDGLYVSEKTTVVLDD 502
           K KDIRKFLDG+YVSEKTT+V  D
Sbjct: 166 KEKDIRKFLDGIYVSEKTTIVPTD 189


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = -1

Query: 493 HNSCFLRYIKTIQELSDILILDCSRLLDESSRARDIFQR 377
           +N+C LR IK +  L+ +L  + SRL +  SR RD+F++
Sbjct: 25  NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFKK 61


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 187 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 50
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = +3

Query: 54  HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 218
           H+  D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 219 AHF 227
            +F
Sbjct: 421 LNF 423


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 459 SKNFLISLFLTVVDCWMRAAELETSSKELPSMISSSFCFGELTTVTPGAI 310
           S   + S+F+ +V    R+ E++  +  LP  IS+SF F       P AI
Sbjct: 459 SNTVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI 508


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 459 SKNFLISLFLTVVDCWMRAAELETSSKELPSMISSSFCFGELTTVTPGAI 310
           S   + S+F+ +V    R+ E++  +  LP  IS+SF F       P AI
Sbjct: 459 SNTVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI 508


>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 493 HNSCFLRYIKTIQELSDILILDCSRLLDESSRARD 389
           HN  +L + KT   L DIL+ +CS+   E +   D
Sbjct: 183 HNFYWLEFFKTKVTLDDILVSNCSKFSIEYNNLPD 217


>AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical
           protein F13A2.6 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 343 WRVNDSHTRCHLYPSD 296
           W V+D  T C+L+PSD
Sbjct: 71  WMVSDYDTSCYLFPSD 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,960
Number of Sequences: 27780
Number of extensions: 240170
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)