Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0373
(538 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 104 3e-23
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 104 3e-23
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 102 1e-22
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim... 29 1.5
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /... 28 4.5
At5g48780.1 68418.m06036 disease resistance protein (TIR-NBS cla... 27 6.0
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa... 27 6.0
At3g60670.1 68416.m06788 zinc-binding protein, putative similar ... 27 6.0
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 7.9
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 104 bits (250), Expect = 3e-23
Identities = 49/80 (61%), Positives = 63/80 (78%)
Frame = +2
Query: 263 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 442
IEIRNFLGEK +R+V+M GVT+V S K KDE++++GN +E VS S ALI Q VK KD
Sbjct: 115 IEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKD 174
Query: 443 IRKFLDGLYVSEKTTVVLDD 502
IRKFLDG+YVSEK+ +V ++
Sbjct: 175 IRKFLDGIYVSEKSKIVEEE 194
Score = 100 bits (239), Expect = 7e-22
Identities = 43/83 (51%), Positives = 63/83 (75%), Gaps = 5/83 (6%)
Frame = +3
Query: 3 RLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVEN 167
+++ V+GPRG L R+FKHL +D +++ + LK++ WFG++K A++RT SHV+N
Sbjct: 23 KVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDN 82
Query: 168 MIKGVTKGFQYKMRAVYAHFPIN 236
+I GVT+GF+YKMR VYAHFPIN
Sbjct: 83 LISGVTRGFRYKMRFVYAHFPIN 105
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 104 bits (250), Expect = 3e-23
Identities = 49/80 (61%), Positives = 63/80 (78%)
Frame = +2
Query: 263 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 442
IEIRNFLGEK +R+V+M GVT+V S K KDE++++GN +E VS S ALI Q VK KD
Sbjct: 115 IEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKD 174
Query: 443 IRKFLDGLYVSEKTTVVLDD 502
IRKFLDG+YVSEK+ +V ++
Sbjct: 175 IRKFLDGIYVSEKSKIVEEE 194
Score = 100 bits (239), Expect = 7e-22
Identities = 43/83 (51%), Positives = 63/83 (75%), Gaps = 5/83 (6%)
Frame = +3
Query: 3 RLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVEN 167
+++ V+GPRG L R+FKHL +D +++ + LK++ WFG++K A++RT SHV+N
Sbjct: 23 KVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDN 82
Query: 168 MIKGVTKGFQYKMRAVYAHFPIN 236
+I GVT+GF+YKMR VYAHFPIN
Sbjct: 83 LISGVTRGFRYKMRFVYAHFPIN 105
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 102 bits (245), Expect = 1e-22
Identities = 49/80 (61%), Positives = 61/80 (76%)
Frame = +2
Query: 263 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 442
IEIRNFLGEK +R+V+M GV +V S K KDE+I+EGN +E VS S ALI Q VK KD
Sbjct: 115 IEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKD 174
Query: 443 IRKFLDGLYVSEKTTVVLDD 502
IRKFLDG+YVSEK + +++
Sbjct: 175 IRKFLDGIYVSEKGKIAVEE 194
Score = 99 bits (238), Expect = 9e-22
Identities = 44/83 (53%), Positives = 62/83 (74%), Gaps = 5/83 (6%)
Frame = +3
Query: 3 RLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVEN 167
+++ V+GPRG L R+FKHL +D +++ R LK++ WFGS+K A++RT SHV+N
Sbjct: 23 KVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDN 82
Query: 168 MIKGVTKGFQYKMRAVYAHFPIN 236
+I GVT+GF Y+MR VYAHFPIN
Sbjct: 83 LIAGVTQGFLYRMRFVYAHFPIN 105
>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
Similar to Mycobacterium RlpF (gb|Z84395). ESTs
gb|T75785,gb|R30580,gb|T04698 come from this gene
Length = 223
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 15 VKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGF 194
VKGP G L + V++ L+V+K +++ + +NM+ GV+KGF
Sbjct: 68 VKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGF 126
Query: 195 QYKM 206
+ K+
Sbjct: 127 EKKL 130
>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
Length = 501
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -2
Query: 372 PSMISS-SFCFGELTTVTPGAI 310
PS+IS+ S FG +TTVTPG +
Sbjct: 39 PSIISAASHDFGNITTVTPGGV 60
>At5g48780.1 68418.m06036 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 669
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 380 LEDVSSSAALIQQSTTVKN-KDIRKFLDGLYVSEKTTVVLDDI*NIK 517
LE+ S A+ +++ V+N KD + + L K +++DD+ N+K
Sbjct: 509 LEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVK 555
>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1107
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +2
Query: 284 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 451
G+K +++A + SP+ K +L+ I+G + EDVS S L + T + KD+
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695
Query: 452 FLDG 463
+DG
Sbjct: 696 VIDG 699
>At3g60670.1 68416.m06788 zinc-binding protein, putative similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 245
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 140 EDSLFT-CREH-D*RSN*RLPIQDACCVCSLPH*LCHH*GYSIIEIRNFLGEKYIR 301
+D F C +H D + N + + CC+ PH L H + +++IR ++ +R
Sbjct: 15 KDKFFNACLDHEDDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQIRRYVYRDVLR 70
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 137 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 42
GGK L + FLN L+E ++HAN N+ V VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,181,617
Number of Sequences: 28952
Number of extensions: 220298
Number of successful extensions: 580
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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