Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0372
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   4.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   4.5  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.9  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   7.8  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   7.8  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   7.8  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = -2

Query: 516 RGTDGHVTDEHWARGHNGRVSHDHGGH----QGHVTNVHWAR--GH-NGGVSHDHRGY 364
           RG+    T   ++  + GR  ++ GGH    +G   N    R  G+ NGG   ++RG+
Sbjct: 56  RGSSRSQTPSEFSSNYGGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGF 113


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 119 GXALVEA-PIVPSPVHVGPLVPGQLTPLVHILINI 220
           G AL+   PIV S  H+ P   G+L P +H  +++
Sbjct: 781 GAALLSKFPIVNSTHHLLPSPQGELAPAIHATLDV 815


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 79

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = -2

Query: 504 GHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYY 325
           G+V   H A  HN  VS +    +       +   H G V  +H+  T ++   Y+A  +
Sbjct: 5   GNVIGGHKAALHNPNVSEETKQREKE-----YLEEHEGEVGEEHQKNTGNVRGGYKAAMH 59

Query: 324 DGRISND 304
           +  +S +
Sbjct: 60  NPNVSGE 66


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 392 AGSATI-TGATLGPSATITGLGTMMAGSAMITGETAGFSS 276
           AG  T+  G  LG     T LGT++  + MIT    GF +
Sbjct: 199 AGLGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGA 238


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -2

Query: 531 GQPRPRGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNV 415
           GQ    G   H    H+  GH     H H G  GH+ ++
Sbjct: 734 GQNGSNGGHHHHHHHHYITGHVYGGYHKHSGSGGHLVDM 772


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 378  DHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFFNI 271
            D+R Y    G  +  RYYD R++   G      +N+
Sbjct: 895  DNRHYQILQGFTFLYRYYDLRVNEGLGEKQEALYNL 930


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,077
Number of Sequences: 5004
Number of extensions: 30753
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)