Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0372
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0125 + 12122812-12122911,12123647-12123993 34 0.12
06_02_0124 + 12116278-12116374,12116595-12116881 34 0.12
05_01_0141 - 937428-937717,938483-938705 32 0.50
01_01_0459 + 3400288-3400729,3400760-3400806,3401055-3401141,340... 31 0.66
12_02_0306 + 17307166-17309091 31 0.87
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 31 0.87
06_01_0377 - 2713757-2713772,2713866-2714059 29 2.7
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 3.5
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 29 4.7
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 29 4.7
06_03_0339 - 19687749-19690805 28 6.2
12_02_0329 + 17585046-17585561 28 8.1
11_06_0704 - 26450916-26451128,26451439-26451831 28 8.1
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 8.1
>06_02_0125 + 12122812-12122911,12123647-12123993
Length = 148
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = -2
Query: 567 HRRALG*GPQWRGQP-RPRGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNG 391
H R L + G+ +P G G V D+ W H G + G G + + G+ G
Sbjct: 25 HARELAEASESEGKNVKPTGRSG-VEDQKWGGAHGGGYGYGGGYGGGGYGHPGYGGGYGG 83
Query: 390 GVSHDHRGYTRSLGNNYRARY 328
G + H GY G Y Y
Sbjct: 84 G--YGHPGYGGGYGGGYGQGY 102
>06_02_0124 + 12116278-12116374,12116595-12116881
Length = 127
Score = 33.9 bits (74), Expect = 0.12
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Frame = -2
Query: 567 HRRALG*GPQWRGQP-RPRGTDGHVTDEHWARG-HNGRVSHDHGGHQGHVTNVHWARGHN 394
H R L + G+ +P G G V D+ W G H+G GG+ G + G+
Sbjct: 24 HARELSEASESEGKNVKPSGMPG-VEDQKWGGGYHHGGGYGYGGGYGGGYGRPAYGGGYG 82
Query: 393 GGVSH-------DHRGYTRSLGNNYRARYYDGRISNDHG 298
GG H H GY G Y + Y G HG
Sbjct: 83 GGYGHPGYGGGYGHPGYGDGYGGGYGSGYGGGYGHPGHG 121
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -2
Query: 462 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRL 283
++SH HG H G+ GH+GG+ H G+ L + + G HG + L
Sbjct: 100 KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGL 153
Query: 282 F 280
F
Sbjct: 154 F 154
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 504 GHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 364
GH + GH+G + H GH G + H H GG+ H G+
Sbjct: 104 GHGHGGYGYGGHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149
>01_01_0459 +
3400288-3400729,3400760-3400806,3401055-3401141,
3401230-3401561,3401648-3401807,3402155-3402223,
3403165-3403263
Length = 411
Score = 31.5 bits (68), Expect = 0.66
Identities = 26/85 (30%), Positives = 37/85 (43%)
Frame = -2
Query: 546 GPQWRGQPRPRGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRG 367
GP+ RG PR R G + H R + R +H HGG G G GG + + R
Sbjct: 100 GPERRGAPRARVLGGGMYAAH--RHRHERGAHAHGGGGG---------GGGGGGAKERRA 148
Query: 366 YTRSLGNNYRARYYDGRISNDHGRN 292
+GN + ++S+ HG N
Sbjct: 149 AAVLVGNACHGLFPQKKVSS-HGFN 172
>12_02_0306 + 17307166-17309091
Length = 641
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 410 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTF 270
G+G T+ G GA +G S T G GT+ G A G G TF
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDAR-GGARDGVGETF 518
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 410 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 309
G+G T+ G GA +G S T G GT+ G A
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 239
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 410 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 309
G+G T+ G GA +G S T G GT+ G A
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 390
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 410 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 309
G+G T+ G GA +G S T G GT+ G A
Sbjct: 95 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 128
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 410 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 309
G+G T+ G GA +G S T G GT+ G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = -2
Query: 519 PRGTDGHVTDEHWARGHNGRVSHDHGGHQGHVT-NVHWARGHNGGVSHDHRGYTRSLGNN 343
PRG ++ E N + + G+Q H N + G HD RGY++ +
Sbjct: 446 PRGDRDRISRERTHIDENDKEGNRDRGNQKHEDYNRYCKPGERSSSRHDDRGYSK---HE 502
Query: 342 YRARYYDGRISNDHGRNS 289
R++Y DG +D+ R S
Sbjct: 503 SRSKYRDG--DDDYRRQS 518
>06_01_0377 - 2713757-2713772,2713866-2714059
Length = 69
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -2
Query: 531 GQPRPRGTDGHVTDEHW-ARGHNGRVSHDHGGHQGHVTNVH 412
G P P GH H A+ H R HGGH GH H
Sbjct: 26 GHPAPAKKHGHTPAHHHPAKKHGAR---KHGGHGGHTKPHH 63
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 570 RHRRALG*GPQWRGQPRPRGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNG 391
R R G G + RG+ + + H ++++ HNG+ H+H H N H G+ G
Sbjct: 366 RRGRGRGRGGRGRGRGYHQHNNNHFNNQNY---HNGQ-HHNH-----HANNHHHQGGNRG 416
Query: 390 GVSH 379
G H
Sbjct: 417 GAHH 420
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -2
Query: 546 GPQWRGQPRPRGTDGHVTDEHWARGHNGRVSHDHGGHQG 430
G Q RG P+ GH ++ GH H+H H G
Sbjct: 17 GGQQRGTPQQHLHAGHAQEQPPGHGHGQVQRHEHPAHGG 55
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 335 LGTMMAGSAMITGETAGFSSTFDCSGS 255
LGT+ + AM TG TAGF +F+ S S
Sbjct: 43 LGTLFSFMAMRTGLTAGFVPSFNMSAS 69
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = -2
Query: 537 WRGQPRPRGTDGHVTDE-HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 361
W+ P+ G + A+ V + G H HV A G+ G + R +
Sbjct: 235 WKSSGAPQNFPGSQANVGQQAQNSANPVHANFGSHNAHVETKRGADGNEAGGLKNKRKFA 294
Query: 360 RSLGNNYRA 334
++ GN+ +A
Sbjct: 295 KATGNSSKA 303
>12_02_0329 + 17585046-17585561
Length = 171
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 531 GQPRPRGTDGHVTDEHW-ARGHNGRVSHDHGGHQGHVTNVHWARG 400
G P G +G + W R HN R H HGG +G + W RG
Sbjct: 110 GSTHP-GPEGGRSAAAWLCRSHNHRC-HGHGGGKGGGGDGRWRRG 152
>11_06_0704 - 26450916-26451128,26451439-26451831
Length = 201
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 356 PSATITGLGTMMAGSAMITGETAGFSSTFDCSGSRFQRG 240
P AT TG+ T +G+A G+ + CS R+QRG
Sbjct: 61 PPATPTGVLTRCSGAAGACGDGGSGIAGSGCSWRRWQRG 99
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 477 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 376
R H+ R SH H H+ H T + R H+ HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,897,570
Number of Sequences: 37544
Number of extensions: 268949
Number of successful extensions: 987
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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