Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0372
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)               32   0.39 
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   31   0.67 
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         31   0.89 
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_32399| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)                     29   3.6  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     29   4.8  
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   6.3  
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)                     28   8.3  
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)                    28   8.3  
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_25884| Best HMM Match : Prothymosin (HMM E-Value=6.3)               28   8.3  

>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
          Length = 910

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 447 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 337
           +G HQGH+ N    +GH G V +++H   TRS G  Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = -2

Query: 513 GTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRA 334
           G D    D+   R H+ R  H HGG  G+  +     GH GG  H H G     G+    
Sbjct: 111 GGDVDCDDDCDGRSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGL 167

Query: 333 RYYDGRISNDHG 298
            + DG     HG
Sbjct: 168 VHGDGGPGPGHG 179


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 504 GHVTDEHWARGHNGRVSHDHGGHQ-GHVTNVHWARGHNGGVSHDH 373
           GH  + H     N   SH H GH   +  + H   GH+ G SH+H
Sbjct: 328 GHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHSHEH 372



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 507 DGHVTD-EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 361
           D  V D E  A GH     H H  H GH    H     N G SH++ G++
Sbjct: 296 DNDVKDSESCADGHGHSHGHSHENH-GHSHENHGHSHENHGHSHENHGHS 344



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -2

Query: 474 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRIS 310
           GH+   SH++ GH     GH    H     N G SH H G++  + G+++    +    S
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369

Query: 309 NDHGRNSRLF 280
           ++H     L+
Sbjct: 370 HEHEPKQDLY 379



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 447 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 292
           HG   GH    H     N G SH++ G++    N+  +  + G   ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = -2

Query: 504 GHVTDEHWARGHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTRSLGNNYR 337
           GH  + H     N   SH++ GH     GH    H     N G SH++ G++    + + 
Sbjct: 314 GHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHSHEHE 373

Query: 336 AR 331
            +
Sbjct: 374 PK 375


>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
 Frame = -2

Query: 480 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 313
           +R  +G    DHGG    H G   +    R  +GG   DH G  R  G   R     GR 
Sbjct: 2   SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR- 60

Query: 312 SNDHGRNSR 286
             DHG   R
Sbjct: 61  --DHGGTGR 67



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
 Frame = -2

Query: 492 DEHWARGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYY 325
           D    R  +G    DHGG +   G     H   G + GG   DH G  R  G   R    
Sbjct: 5   DHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGG 64

Query: 324 DGRISNDHGRNSR 286
            GR   DHG   R
Sbjct: 65  TGR---DHGGTGR 74


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -2

Query: 516  RGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTR 358
            RG  G  +  H + G   R     G    H+++    RG  GGVS  H G+ R
Sbjct: 1046 RGDGGGASSAHISHGRLTR-GDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097


>SB_32399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 507 DGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHN 394
           +GHV+D+ W++  +G V++      GH ++  W+R  +
Sbjct: 8   NGHVSDKGWSQARHGMVTNT--TQNGHGSDTEWSRARH 43


>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1265

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 516 RGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRS 355
           RG D +  + H+ R      S  H  H+G VTN  ++         DHRG  RS
Sbjct: 817 RGVDTNDRNSHYER------SDSHRDHRGVVTNDRYSYYGRSDYQRDHRGLRRS 864


>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
          Length = 125

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 513 GTDGHVTDEHWARGHNGRVSH-DHGGHQGHVTNVHWARGHNGGVSHDHRGYT 361
           G  G+    H    H+  + H D+GGH       H+  GH+ G+ HD+ G+T
Sbjct: 62  GYGGYHHGYHGYHDHDVHIHHHDYGGHD------HYDGGHHDGMHHDY-GHT 106


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
 Frame = -2

Query: 516 RGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGV----SHDHRGYTRSLG 349
           R T   + +  W +  NGRV H      GHV N+  +   + GV    + + RG+T S+ 
Sbjct: 119 RSTGNPIPEFKWTK--NGRVIH-----VGHVINIARSFKTDEGVYTCVAQNGRGFTNSVS 171

Query: 348 NNYRARYYDGRIS---------NDHGRNSRLFFN 274
           +     YY  RI           D  RN RL+ N
Sbjct: 172 STVSIVYYSPRIQQPLQNDTFVEDVSRNFRLYCN 205


>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 480 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 340
           A GH   ++H H     H      A  H  G++H H   T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 453 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 286
           H HGG +   T+ H   + H+    H HR +     + +      GR ++DH    R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473


>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 339

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 410 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSS 276
           G+G +++G   + G  L   A + G+G + AG+ ++   + GF+S
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVV---SRGFTS 243


>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
          Length = 861

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = -2

Query: 516 RGTDGHVTDEHWA-RGHNGRVSHDHGG---HQGHVTNVHWA-RGHNGGVSHDHRGYTRSL 352
           RGT G       A RG+ G  +  +GG   H G  T  +     H GG +  + G+TR  
Sbjct: 315 RGTTGASRGTTGASRGNTGGFTRHYGGFTRHYGGFTRHYGVFTRHYGGFTRHYGGFTRHY 374

Query: 351 GNNYRARYYDG 319
           G+    R+Y G
Sbjct: 375 GD--FTRHYGG 383


>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 468 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 364
           +G  SHD  G   H  +   + GH+G  SHD  G+
Sbjct: 5   DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF 39


>SB_25884| Best HMM Match : Prothymosin (HMM E-Value=6.3)
          Length = 175

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = -2

Query: 507 DGHV---TDEHWARGHNGRVSHDHG--GHQGHVTNVHWARGHNGGVSHDHR--GYTRS 355
           DGH+   T E    GH    +H+    GH    T+ H   GH    +H+H   GY ++
Sbjct: 89  DGHMRTCTHEQSEDGHMKTCTHEQSEDGHMKTCTHEHSEDGHTKTCTHEHSEDGYMKT 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,251,439
Number of Sequences: 59808
Number of extensions: 277911
Number of successful extensions: 1086
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)