Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0372
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05510.1 68415.m00583 glycine-rich protein 35 0.059
At3g63100.1 68416.m07087 glycine-rich protein 33 0.24
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 33 0.24
At2g05440.2 68415.m00575 glycine-rich protein 33 0.24
At2g05440.1 68415.m00574 glycine-rich protein 33 0.24
At1g27090.1 68414.m03302 glycine-rich protein 30 1.7
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 28 5.1
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 28 6.8
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 28 6.8
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 28 6.8
At2g24990.1 68415.m02988 RIO1 family protein similar to extragen... 28 6.8
At1g34550.1 68414.m04294 expressed protein contains Pfam profile... 27 9.0
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -2
Query: 471 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 340
H G H GGH G + H GHNGG H GY G +Y
Sbjct: 44 HGGHGGHGGGGHYGGGGHGHG--GHNGGGGHGLDGYGGGHGGHY 85
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = -2
Query: 543 PQWRGQPRPRGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 364
P+ +P G G H GH G H HGGH G H G+ GG H G+
Sbjct: 32 PESEATVQPEGYHGG-HGGHGGGGHYGGGGHGHGGHNG--GGGHGLDGYGGG----HGGH 84
Query: 363 TRSLGNNY 340
G +Y
Sbjct: 85 YGGGGGHY 92
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 32.7 bits (71), Expect = 0.24
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = -2
Query: 504 GHVTDEHWA-RGHNGRVSHDHG---GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGN 346
GH EH RGH H HG GH+ H + R H G H HRG+ R G
Sbjct: 80 GHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGR 139
Query: 345 NY 340
+
Sbjct: 140 GH 141
Score = 31.9 bits (69), Expect = 0.42
Identities = 24/76 (31%), Positives = 30/76 (39%)
Frame = -2
Query: 513 GTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRA 334
G DG V D R G HD+G H + H GH G H G+ R G+
Sbjct: 43 GVDGGV-DRGCCRHCCGGRRHDYGRDCCHCDHCH---GHGYGHGHREHGHDRGHGHGRGH 98
Query: 333 RYYDGRISNDHGRNSR 286
+ G HGR+ R
Sbjct: 99 GHGHGHGHRRHGRDHR 114
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/64 (32%), Positives = 25/64 (39%)
Frame = -2
Query: 534 RGQPRPRGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRS 355
RG RG H G + R D G H+GH H RGH G H G+ R
Sbjct: 90 RGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGH--GHHHHRGHRRGRGRGH-GHGRG 146
Query: 354 LGNN 343
G +
Sbjct: 147 RGGH 150
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/67 (28%), Positives = 24/67 (35%)
Frame = -2
Query: 486 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISN 307
H H H H H GH RGH G H HR + R + ++ G +
Sbjct: 70 HCDHCHGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGH-GH 127
Query: 306 DHGRNSR 286
H R R
Sbjct: 128 HHHRGHR 134
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 522 RPRGTDGHVTDEHWAR-GHNGRVSHDHGGHQGHVTNVH-WARGHNGGVSHDHRG 367
+P+ + GH D W GHN ++ H Q +N H + G +H +G
Sbjct: 1154 QPKRSSGHSRDRQWLNNGHNSSFNNSHNNRQWPYSNSHGYDHGSGSYAAHPPKG 1207
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -2
Query: 531 GQPRPRGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 364
G +P + V E + GH G H GG GH GHNGG H GY
Sbjct: 28 GMVKPESEET-VQPEGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -2
Query: 474 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 379
GH G H HGGH G H G+ GG H
Sbjct: 52 GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -2
Query: 531 GQPRPRGTDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 364
G +P + V E + GH G H GG GH GHNGG H GY
Sbjct: 28 GMVKPESEET-VQPEGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -2
Query: 474 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 379
GH G H HGGH G H G+ GG H
Sbjct: 52 GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81
>At1g27090.1 68414.m03302 glycine-rich protein
Length = 420
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -2
Query: 477 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGR 316
+ GR GG G N RG GG + + Y +S GN Y+ YY+ R
Sbjct: 340 QNQRGRRGARRGG--GGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNR 392
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -2
Query: 489 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 310
E + RG SHD ++ + GG++HD Y R + RIS
Sbjct: 354 ESYTRGSPSHPSHDEFDRYPRAHSLQMP-SYAGGMNHDFVDYMYHNNPRARGQGQGSRIS 412
Query: 309 NDHGRN 292
+ GRN
Sbjct: 413 GEMGRN 418
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 652 DWLDGTDDDRLRGNNGGVS 596
DWLDG DDD L G GG S
Sbjct: 44 DWLDGKDDDELIG--GGFS 60
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = -2
Query: 504 GHVTDEHWARGHNGRVSHDHGGHQGHVTNV--HWARGHNGGVSHDH 373
GH D + GH HDH H VT H H G SH H
Sbjct: 181 GH--DHGHSHGHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = -2
Query: 504 GHVTDEHWARGHNGRVSHDHGGHQGHVTNV--HWARGHNGGVSHDH 373
GH D + GH HDH H VT H H G SH H
Sbjct: 181 GH--DHGHSHGHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224
>At2g24990.1 68415.m02988 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 537
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 652 DWLDGTDDDRLRGNNGGVS 596
DWLDG DDD L G GG S
Sbjct: 45 DWLDGKDDDELIG--GGFS 61
>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
PF04765: Protein of unknown function (DUF616);
expression supported by MPSS
Length = 812
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 640 GTDDDRLRGNNGGVSHDH 587
GTD +RGN GG S DH
Sbjct: 102 GTDRFSVRGNGGGASSDH 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,445,191
Number of Sequences: 28952
Number of extensions: 184322
Number of successful extensions: 693
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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