Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0371
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    81   8e-17
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    29   0.61 
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   4.3  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   4.3  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   9.9  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   9.9  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 81.4 bits (192), Expect = 8e-17
 Identities = 38/84 (45%), Positives = 50/84 (59%)
 Frame = +3

Query: 255 KNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFINR 434
           +    R L+VD               T+ DVIHS  +PSLGIK D  P RLNQ +  I+R
Sbjct: 150 EEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDR 209

Query: 435 PGIFFGQCSEICGANHSFIPIVIE 506
            G+F+GQCSE+CG  HS +PIV++
Sbjct: 210 EGLFYGQCSELCGVLHSSMPIVVQ 233



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = +1

Query: 28  RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 207
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 208 F-----NNIEFDSYIIPSNEIK 258
           F       + FDSY++P  +++
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLE 150


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 349 ITSVAVIIIRIWLFIGKII-RLSTSNSRNSLFLFHWMGLYMSQIQY 215
           + S+ + I   W ++G II +L++ NS+    +FHW+    S + Y
Sbjct: 5   LVSILLSIALAW-YVGYIINQLTSRNSKRPPIVFHWIPFVGSAVAY 49


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 301 KIIRLSTSNSRNSLFLFHWMGLYM-SQIQYY*NLN 200
           ++ + S SN+ +  F+ HW G Y+ S +Q + + N
Sbjct: 137 ELYQASVSNNTHEYFVPHWNGTYLASNVQIFNSSN 171


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 301 KIIRLSTSNSRNSLFLFHWMGLYM-SQIQYY*NLN 200
           ++ + + SN+ +  F+ HW G Y+ S +Q Y + N
Sbjct: 137 ELYQAAISNNTHEYFVPHWNGTYLASNVQIYNSSN 171


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 396 PGRLNQTNF-FINRPGIFFGQCSEICGANHSFIPIVIERFQSKTLLI 533
           PG  N T+  F    GI F +  E     HSF+P   E F  K  L+
Sbjct: 195 PGDHNSTDLKFAENIGIKF-ETPEQFFLGHSFVPPNFESFHPKNYLV 240


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 158 VISGLLSSSNKYNNRNDGKAMKINVKAGIIVQINSIICPS---NKNRLIYLLK 9
           ++S +L S+NK NN    K    N +  ++ Q++  I P     K RL +LL+
Sbjct: 117 LVSIILESNNKSNNELITKNGYGNTRLDLLNQLSEYISPEILLPKRRLEHLLQ 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,532
Number of Sequences: 5004
Number of extensions: 33384
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)