Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0371
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       110   6e-25
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       110   6e-25
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        68   5e-12

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  110 bits (265), Expect = 6e-25
 Identities = 50/81 (61%), Positives = 59/81 (72%)
 Frame = +3

Query: 264 EFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGI 443
           +FRLL+VD               TA DVIHS  +P+L +K+DA PGRLNQT FFI RPG+
Sbjct: 142 DFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGV 201

Query: 444 FFGQCSEICGANHSFIPIVIE 506
           F+GQCSEICGANHSF+PIVIE
Sbjct: 202 FYGQCSEICGANHSFMPIVIE 222



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
 Frame = +1

Query: 28  RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 207
           R+L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD
Sbjct: 61  RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120

Query: 208 FNN--IEFDSYIIPSNEI 255
           + +  +EFDSY++P+ ++
Sbjct: 121 YQSETLEFDSYMVPTTDL 138


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  110 bits (265), Expect = 6e-25
 Identities = 50/81 (61%), Positives = 59/81 (72%)
 Frame = +3

Query: 264 EFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGI 443
           +FRLL+VD               TA DVIHS  +P+L +K+DA PGRLNQT FFI RPG+
Sbjct: 142 DFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGV 201

Query: 444 FFGQCSEICGANHSFIPIVIE 506
           F+GQCSEICGANHSF+PIVIE
Sbjct: 202 FYGQCSEICGANHSFMPIVIE 222



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
 Frame = +1

Query: 28  RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 207
           R+L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD
Sbjct: 61  RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120

Query: 208 FNN--IEFDSYIIPSNEI 255
           + +  +EFDSY++P+ ++
Sbjct: 121 YQSETLEFDSYMVPTTDL 138


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
 Frame = +1

Query: 28  RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 207
           R+L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD
Sbjct: 61  RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120

Query: 208 FNN--IEFDSYIIPSNEI 255
           + +  +EFDSY++P+ ++
Sbjct: 121 YQSETLEFDSYMVPTTDL 138



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 29/61 (47%), Positives = 36/61 (59%)
 Frame = +3

Query: 264 EFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGI 443
           +FRLL+VD               TA DVIHS  +P+L +K+DA PGRLNQT FFI +   
Sbjct: 142 DFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWS 201

Query: 444 F 446
           F
Sbjct: 202 F 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,740
Number of Sequences: 59808
Number of extensions: 198731
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)