Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0370
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    26   0.37 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   4.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   4.5  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 290 TSLGVPGSPAVSAVTERVLVSKEAPQME 207
           T  G+P +P+ SA    V + KE+PQM+
Sbjct: 220 TPTGIP-TPSTSASPPTVNIKKESPQMQ 246


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 184 SQVQQDGGEHQRWRQNHPQSWYRRSQRL 101
           S V  D G   + +  H   W+RR  RL
Sbjct: 2   SGVVGDAGRASKGQDKHMVHWFRRGLRL 29


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 431 LQQQHPAHQPSQWKQQLCWYLG 496
           +Q+QHP H     +QQ   Y G
Sbjct: 171 MQEQHPQHHQPHHQQQHMMYGG 192



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +3

Query: 189 THEWQNFHLRSFLTDQHPLRDRAH 260
           T    N H+   + +QHP   + H
Sbjct: 159 TQSMNNHHMGHHMQEQHPQHHQPH 182


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 431 LQQQHPAHQPSQWKQQLCWYLG 496
           +Q+QHP H     +QQ   Y G
Sbjct: 173 MQEQHPQHHQPHHQQQHMMYGG 194



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +3

Query: 189 THEWQNFHLRSFLTDQHPLRDRAH 260
           T    N H+   + +QHP   + H
Sbjct: 161 TQSMNNHHMGHHMQEQHPQHHQPH 184


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 360 HLHGSYNMNNLNNDVAIINHNH 425
           H H +YN N L+N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 360 HLHGSYNMNNLNNDVAIINHNH 425
           H H +YN N L+N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 360 HLHGSYNMNNLNNDVAIINHNH 425
           H H +YN N L+N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 360 HLHGSYNMNNLNNDVAIINHNH 425
           H H +YN N L+N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,355
Number of Sequences: 336
Number of extensions: 3233
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)