Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0370
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   2.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   6.4  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.4  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.5  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 548 QQKRQVSLQVITNAVCARTYGNSVIIGSTLCV 643
           ++ R V ++ ITNA C + Y   VI G+ L +
Sbjct: 461 KRSRLVYIEKITNAACYQEYSAIVINGTALAI 492


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
 Frame = +3

Query: 216 RSFLTDQHPLRDRAHCWRTRNAQARQFTLAFGTANIFSGGTRV-------TTSSVHLHGS 374
           RS+  ++  L+D     R  NA +   T AFG+   F   T         TT++    G+
Sbjct: 209 RSYSFEELRLQDYNQGRRFGNASSTNTTSAFGSTPAFGASTTPFGQNLSGTTNNATPFGT 268

Query: 375 YNMNNLNNDVAIINHNHVGFNNNIQRINLASGNNN 479
            N  N      +       F +N       SG NN
Sbjct: 269 SNATNTTPGSGLFGGGS-AFGSNTTNTGFGSGTNN 302


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 297 TLAFGTANIFSGGTRVTTSSVHLHGSYNMNN 389
           T +FG A      T  +TSS    GS N NN
Sbjct: 67  TFSFGKAATTGNSTNASTSSPFSFGSTNTNN 97


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 336 TRVTTSSVHLHG-SYNMNNLNNDVAIINHNHVGFNNNIQRINLASGNNN 479
           TR   S   L+G +Y  N  NN V+   ++     NN Q  +  S N+N
Sbjct: 213 TRRVVSEGPLNGVNYKQNTTNNRVSSFQNSQYSTLNNFQNNSNQSPNSN 261


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 187 ALTNGRTSICGASLLTNTRSVTALTAGE 270
           ALT+ + S   + LLT  R+VT L +GE
Sbjct: 549 ALTSSKVSSSTSHLLTRFRNVTLLGSGE 576


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 150 VGGRTTHNPGTVEVSGFLGASKTLSPGDTDL 58
           +G    H  G+V   GF G+    +P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 585  LVMTWRLTWRFCWLLAPEAASEVLPNRQPRPK 490
            L+ TW  TW   ++  PE ++++  N +   K
Sbjct: 1418 LIKTWNTTWNNLFIYYPELSNDLNINNEAEMK 1449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,670
Number of Sequences: 5004
Number of extensions: 46276
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)