Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0370
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 32 0.41
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551... 32 0.41
02_02_0549 + 11410129-11412180 30 2.2
08_01_0395 - 3502750-3503033,3504844-3505663 29 5.1
07_03_0136 + 14089787-14090269 29 5.1
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169... 28 6.7
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 28 8.9
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 8.9
05_03_0200 + 9752625-9753182 28 8.9
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 32.3 bits (70), Expect = 0.41
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 245 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 120
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>02_05_1269 +
35352825-35352888,35353645-35353968,35355062-35355183,
35355361-35355482,35355651-35355755,35356402-35356765,
35357181-35357321,35357619-35359109
Length = 910
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 216 RSFLTDQHPLRDRAHCWRTRNAQARQFT 299
R L HPLRD H WR R A FT
Sbjct: 875 RRELVPNHPLRDAIHHWRLRRAMRTNFT 902
>02_02_0549 + 11410129-11412180
Length = 683
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +3
Query: 300 LAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQRINLASGNNN 479
LA +F+G V ++S HL N D IN+NHVG N N +LAS +N+
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLFAVELDTIQNPDFRDINNNHVGININ----DLASRDND 184
>08_01_0395 - 3502750-3503033,3504844-3505663
Length = 367
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 446 PAHQPSQWKQQLC--WYLGLGCRFGRTSDAASGANNQQK 556
P +PS WK ++C W + C FG A GA K
Sbjct: 239 PMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277
>07_03_0136 + 14089787-14090269
Length = 160
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = -3
Query: 335 AAGEDVSCTKSEGELTSLGVPGSPAVSAVTERVLVSKEAP------QMEVLP-FVSAITS 177
A GED + T +E TS+GVP + T R P + EV+P ++A S
Sbjct: 17 AGGEDNAATSTEETATSIGVPATYRSRPETGRYWTPTRRPLRRASGEEEVMPGMMAASRS 76
Query: 176 PARW 165
RW
Sbjct: 77 RGRW 80
>11_01_0217 -
1698721-1698875,1699122-1699421,1699840-1699918,
1699998-1700062,1700187-1700239,1700654-1701072
Length = 356
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 139 SAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTALTAGEPGTP 282
+AA+ G HL +V + + + C L T V + AGE G P
Sbjct: 24 TAADTGGFTHLLSVVSSASISFITDCRPGLSIPTEEVRRVVAGEEGAP 71
>07_03_1704 +
28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 356 TGGGDPGAAGEDVSCTKSEGELTSL 282
+GGG+PG G++ S TK+ G + L
Sbjct: 438 SGGGNPGMMGQNDSSTKTVGNMLHL 462
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 166 GGEHQRWRQNHPQSW 122
GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573
>05_03_0200 + 9752625-9753182
Length = 185
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = -3
Query: 335 AAGEDVSCTKSEGELTSLGVPGSPAVSAVTERVLVSKEAP------QMEVLPFVSAIT-S 177
A GED + T +E TS+GVP + T R + P + EV+P + A + S
Sbjct: 28 AGGEDDTATSTEETATSVGVPATYRSRPKTGRYWMPTRRPLRRASGEEEVMPGMRAASRS 87
Query: 176 PARW 165
RW
Sbjct: 88 RGRW 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,792,129
Number of Sequences: 37544
Number of extensions: 407263
Number of successful extensions: 1767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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