Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0370
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    29   2.4  
At5g23410.1 68418.m02745 expressed protein similar to Adagio 3 [...    29   3.2  
At4g30180.1 68417.m04291 expressed protein                             29   3.2  
At3g49590.2 68416.m05420 expressed protein                             28   5.6  
At3g49590.1 68416.m05419 expressed protein                             28   5.6  
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ...    28   5.6  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    28   7.4  
At5g67370.1 68418.m08495 expressed protein similar to unknown pr...    27   9.8  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    27   9.8  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    27   9.8  
At5g10510.1 68418.m01217 ovule development protein, putative sim...    27   9.8  
At3g46690.1 68416.m05068 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.8  

>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 183 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 82
           HK+  MG STS+ G T+H+P    V    G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327


>At5g23410.1 68418.m02745 expressed protein similar to Adagio 3
           [Arabidopsis thaliana] GI:13487072/FKF1 [Arabidopsis
           thaliana] GI:6960305
          Length = 84

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 195 EWQNFHLRSFLTDQHPLRDRAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGS 374
           +W+  H    + D  P +++   WR  N   +   LA+G +    GGTRV     H    
Sbjct: 9   DWETKHEMESVED--PSKEKPS-WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHNGEE 65

Query: 375 YNMNNLN 395
           + +N L+
Sbjct: 66  WILNELH 72


>At4g30180.1 68417.m04291 expressed protein 
          Length = 158

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 38  SNLTTTTRSVSPGLRVLDAPRK 103
           SN TTTT S S G+R+L+ P K
Sbjct: 80  SNPTTTTSSSSDGIRILERPDK 101


>At3g49590.2 68416.m05420 expressed protein 
          Length = 603

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 341 PGAAGEDVSCTKSEGELTSLGVPGSPAVSAVTERVLVSKEAPQMEVLPFVSAITSPA 171
           PG      S T + G+   L  P SP+ S  T R +    +P++ V P  + +T P+
Sbjct: 317 PGLHDFHWSRTDAFGDNHQLSPPFSPSGSPSTPRYISGGNSPRINVRPGTAPVTIPS 373


>At3g49590.1 68416.m05419 expressed protein 
          Length = 603

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 341 PGAAGEDVSCTKSEGELTSLGVPGSPAVSAVTERVLVSKEAPQMEVLPFVSAITSPA 171
           PG      S T + G+   L  P SP+ S  T R +    +P++ V P  + +T P+
Sbjct: 317 PGLHDFHWSRTDAFGDNHQLSPPFSPSGSPSTPRYISGGNSPRINVRPGTAPVTIPS 373


>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 468

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 154 GAHPHLAGLVIALTNGRTSICGASLLTNTRSVTALTAGEPGTPRLVSSPSLLVQ 315
           G  P+ A +  AL+ G     GA+ L     +T+ T   PG    +SSP+ ++Q
Sbjct: 228 GWSPYSAPVSPALSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQ 281


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 264 WRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLN 395
           WR  N   +   LA+G +    GGTRV     H    + +N L+
Sbjct: 564 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELH 607


>At5g67370.1 68418.m08495 expressed protein similar to unknown
           protein (gb|AAC18972.1)
          Length = 327

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 120 YQDCGWFCRQRWCSPPSCWTCDR 188
           Y++ GW+  Q W  PP     DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 35  PSNLTTTTRSVSPGLRVLDAPRKPL 109
           PS+ TTTTR+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 35  PSNLTTTTRSVSPGLRVLDAPRKPL 109
           PS+ TTTTR+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g10510.1 68418.m01217 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 566

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 378 NMNNLNNDVAIINHNHVGFNNNIQRINLASGNNN 479
           N+NN N +    N NH   NNN +RIN  + N+N
Sbjct: 187 NVNN-NTNHRNDNDNHYRGNNNGERINNNNNNDN 219


>At3g46690.1 68416.m05068 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 452

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 260 VSAVTERVLVSKEAPQMEVL--PFVSAITSPARW 165
           +  VTER  ++K APQ+EVL  P V    S   W
Sbjct: 320 IKMVTERGYIAKWAPQIEVLGHPAVGGFWSHCGW 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,917
Number of Sequences: 28952
Number of extensions: 277565
Number of successful extensions: 1027
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)