Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0368
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          126   2e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             117   1e-26
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 80   1e-15
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                55   5e-08
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              36   0.030
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.0  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   6.0  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   6.0  
SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     28   8.0  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  126 bits (304), Expect = 2e-29
 Identities = 54/114 (47%), Positives = 82/114 (71%)
 Frame = +2

Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 437 QTREHALLAFTLGVKQLIVGVNKMIPLNHHYSEPRFEEIKKEVSSYIKKIGYNP 598
           QTREHA+LA T GVK L++ VNKM      ++E R+EEIK +++ ++KK+G+NP
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/43 (41%), Positives = 31/43 (72%)
 Frame = +3

Query: 129 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGS 257
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGN 208


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  117 bits (281), Expect = 1e-26
 Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
 Frame = +2

Query: 260 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 439
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 440 TREHALLAFTLGVKQLIVGVNK--MIPLNHHYSEPR 541
           TREHA+L  +LGV QLIV +NK  M+ L +H  +PR
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKPR 96


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +2

Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 367
           TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +3

Query: 189 MGKGSFKYAWVLDKLKAERERG 254
           MGKGSFKYAWVLDKLKAERERG
Sbjct: 1   MGKGSFKYAWVLDKLKAERERG 22


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 25/27 (92%), Positives = 25/27 (92%)
 Frame = +2

Query: 44  MGKEKTHINIVVIGHVDSGKSTTTGHL 124
           M KEK HINIVVIGHVDSGKSTTTGHL
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHL 27



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 126 IYKCGGIDKRTIEKFEKEAQEM 191
           IYKCGGIDKRTIEKFEKE+ E+
Sbjct: 28  IYKCGGIDKRTIEKFEKESSEV 49


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 21/89 (23%), Positives = 41/89 (46%)
 Frame = +2

Query: 311 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 490
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 491 VGVNKMIPLNHHYSEPRFEEIKKEVSSYI 577
           +  NK+  +    ++ ++++I K V   I
Sbjct: 123 ILQNKIDLVKESQAKDQYDQILKFVQGTI 151


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 7/141 (4%)
 Frame = +2

Query: 5   RDYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLHLQMWWY*Q-----TYHREV 169
           R   + ++R  P   ++ T I + V+G+V+SGKST  G L        Q        R +
Sbjct: 94  RKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHL 152

Query: 170 REGGPGNG*RILQICLGIGQTKG*A*AWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNM 349
            E   G    I    LG   T G    +     A    E S   +T ID  GH  ++K  
Sbjct: 153 HEIQSGRTSSISHEILGFSCT-GEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTT 211

Query: 350 ITGTS--QADCAVLIVAAGTG 406
           I G +    D A+L++A   G
Sbjct: 212 IFGLTGHSPDYAMLVIAGNAG 232


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 308 IIDAPGHRDFIKNMITGTSQADCAVLIV 391
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 302 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 397
           T  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 296 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 171 EKEAQEMGKGSFKYAWVLDKLKAERERGSQSILLSGSSKLASTMLPSLMLLD--TEISSR 344
           E + ++M K  F Y ++LDK   E ++ SQ I     + + S     + L D  TE+ S+
Sbjct: 407 EDKVKKMEKVLFDYRFLLDKSNFELQQHSQHIEAVRKNAVESITSAIIKLKDFQTEVESK 466

Query: 345 T 347
           T
Sbjct: 467 T 467


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 201 SFKYAWVLDKLKAERER--GSQSILLSGSSKLASTMLPSLM 317
           +++  W++DK +AE +R  GS+   L    K  ST  P+ M
Sbjct: 343 AYRVNWIIDKFRAENQRANGSKGATLEEFFKFLSTRDPADM 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,527,697
Number of Sequences: 59808
Number of extensions: 444667
Number of successful extensions: 1335
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)