Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0366
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    29   0.51 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    28   1.6  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    27   3.6  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   4.7  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   6.3  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.3  

>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 679 FSKSSGCASIGRSTITSPFPCFVQFSRIFNPADRANFTVIL---DFLIRLFNWFI 524
           FSK +G A+     +  P  CF QF    N  D  N+T ++     L+ L  WF+
Sbjct: 448 FSKINGYAACAFVLLMVPILCFPQFRGKDNTPDAMNWTCVVFGGPMLMVLIWWFV 502


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 299 SFDIFYEVYRINREITLSTGISMSKIATLSTFSLNSIPAKASS*MTSSGMMYIPASMLSY 120
           +F  F  +   N +I     I  +  AT+S++ LN+    A+S  TSSG     +  +SY
Sbjct: 504 AFSYFQRLIDHNMQIYDDETIQKAGEATVSSW-LNTPALSAASARTSSGRNSSESDRVSY 562

Query: 119 FGI 111
           FG+
Sbjct: 563 FGL 565


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 724 SGSATFSTGRSTSWAFSKSSGCASIGRST 638
           SGSAT +TG +T+ ++S  S  +S   S+
Sbjct: 366 SGSATSATGSATTTSYSSDSSASSSSSSS 394


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 82  IKPVQIADIPIPKYESIDAGMYIIPDEVIQ---ELALAGIELSENV 210
           ++ + I + PIP  +++D+   IIP   ++   ++ +AGI    NV
Sbjct: 298 VRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNV 343


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
 Frame = -3

Query: 422 WSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSREIGILNWSF---DIFYEVYRINRE-- 258
           W ID + +   +S D G++     +    Y  + ++    W+F   D +  V  ++ +  
Sbjct: 4   WPIDAISKKPSVSLDYGIIGACQLLNPSGYHRAEKVENNEWTFARYDSYTGVELVDLDKR 63

Query: 257 ---ITLSTGISMSKIATLSTFSLNSIPAKASS*MTSSGMMYIPASMLS 123
              ++L+    + K+  L   + NS     SS    S   Y+P ++ S
Sbjct: 64  WDILSLNPNYKLPKLTELPAEATNSTRKATSSSFGLSVCRYVPRNLFS 111


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = +2

Query: 50  SHSLERRPPHQSNPSKSRISQYRN---TKA----STLECTSSPTKSFKN 175
           +H   RRPP Q +   ++  + +N   TKA    S++E T SP K  K+
Sbjct: 87  AHPRSRRPPRQISIDSAKKEETKNTGSTKAADTKSSVEATISPLKDTKS 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,581
Number of Sequences: 5004
Number of extensions: 52694
Number of successful extensions: 211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)