Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0366
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0288 - 11653136-11654074,11655252-11655965                       30   2.1  
03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419     30   2.1  
09_06_0127 + 21019266-21019670                                         29   3.7  
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100...    29   3.7  
07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469     29   4.9  
09_04_0541 + 18437075-18440062                                         28   8.6  

>05_03_0288 - 11653136-11654074,11655252-11655965
          Length = 550

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +1

Query: 91  VQIADIPIPKYESIDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIP 243
           V ++   +P+ E +  G  ++P   ++ +A+ G+E+  N   V +F    P
Sbjct: 109 VMVSFFGLPEKEVVRIGKAVLPKFFLEGMAMEGLEVVRNAKKVVVFSPLFP 159


>03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419
          Length = 464

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 245 TGISMSK-IATLSTFSLNSIPAKASS*MTSSGMMYIPASMLSYFGIGISAIWTGLIDAAA 69
           TGIS+   +A     SL + PA AS  + ++ + ++PAS +S   +G   + +G    AA
Sbjct: 74  TGISLVVGVANGDIPSLAADPAAASRWLAANVLPFVPASTISVVAVGNEVLESGDASLAA 133

Query: 68  A 66
           A
Sbjct: 134 A 134


>09_06_0127 + 21019266-21019670
          Length = 134

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 724 SGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFP 620
           SGS+T +TG + S A S SS  AS  RS    P P
Sbjct: 44  SGSSTSTTGTTPSAAASGSSSTASSSRSVNAPPPP 78


>06_03_1076 +
           27409107-27409204,27409731-27409835,27409915-27410032,
           27410180-27410230,27410328-27410419,27410558-27410657,
           27411018-27411137,27411227-27411295,27411468-27411514,
           27411597-27411652,27412293-27412333,27412570-27412675,
           27413891-27414023,27414096-27414645
          Length = 561

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 69  GRRINQTRPNRGYPNTEIR-KHRRWNVHHPRRSHSRTRLGRD*IERKCRQRCDF*H*NS- 242
           G R +    +RGY   E R K+R  N  + R+    +R GRD  E + R R D  H  S 
Sbjct: 461 GERSSSRYDDRGYSKHESRGKYRDGNDDYRRQPGGGSRYGRDKYEGERRYREDDGHGRSD 520

Query: 243 R*QRD 257
           R +RD
Sbjct: 521 RHKRD 525


>07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469
          Length = 198

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 51  RTHWSGGRRINQTRPNRGYPNTEIRKHRRWNVHHPRRSHSRTRLG 185
           R  W G   + +TR  R +P       RRW  H PRR    T +G
Sbjct: 10  RWRWGGASSLARTRRRRLFP-----AWRRWIRHCPRRIRPETAVG 49


>09_04_0541 + 18437075-18440062
          Length = 995

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 71  PPHQSNPSKSRISQYRNTKASTLECTSSPT 160
           PP Q  P   R  Q+R TKAS +   ++ T
Sbjct: 82  PPQQPQPQTPRQRQHRETKASDVAAAAAST 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,640,836
Number of Sequences: 37544
Number of extensions: 346697
Number of successful extensions: 1084
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)