Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0366
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 33 0.18
SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35) 32 0.54
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 31 0.72
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 31 0.95
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062) 28 6.7
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 285 ENVEAPVENADFPA-DSVSFVENLDAPVEDADVLAD 389
E VEAPVE + P ++V+ VE + P+E+A+ A+
Sbjct: 165 EEVEAPVEEVEAPVEEAVASVEEAEVPIEEAETQAE 200
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +3
Query: 285 ENVEAPVENADFPADSV-SFVENLDAPVEDA 374
+ VEAP+E A+ P + V + VE ++AP+E+A
Sbjct: 33 KKVEAPIEEAEAPEEEVEATVEEVEAPMEEA 63
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 282 VENVEAPVENADFPADSVSFVENLDAPVEDADVLADSV 395
VE EAP+E A P S VE +AP E+ + + V
Sbjct: 137 VEITEAPIEEAKAPERVESSVEEAEAPEEEVEAPVEEV 174
>SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)
Length = 442
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 255 DFPVDSVNF-VENVEAPVENADFPA-DSVSFVENLDAPVEDADVLAD 389
D P D+ + E+ + P E+AD PA D+ + + +APVE +D AD
Sbjct: 384 DAPADTTDTPAEDADTPAEDADTPAEDADTATDAAEAPVEASDPPAD 430
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 294 EAPVENADFPA-DSVSFVENLDAPVEDADVLADS 392
+AP + D PA D+ + E+ D P EDAD D+
Sbjct: 384 DAPADTTDTPAEDADTPAEDADTPAEDADTATDA 417
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 501 QVAL*TSWMNQLKRRMRKSRMT-VKLARSAGLNILLNWTKHGNGLVIVDLPIEAQPEDLE 677
+VA W+++ +R+ + M KL+ I T G G+V++D+P ++ L
Sbjct: 129 EVAELKMWLSKARRKQWREEMQGFKLSDEDEAGIEAERTSKGEGMVVIDMPSSSESTPLR 188
Query: 678 KAQLVDLPVENVA 716
L D ++VA
Sbjct: 189 NDILADDDDDSVA 201
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 31.1 bits (67), Expect = 0.95
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 450 NQPGHRRPQLEHRRCLRSLQNQ--PGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFLR 280
NQ H++ Q +H R + QNQ H++ Q +H + Q+Q +RH + + +H R
Sbjct: 568 NQHHHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHR 626
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 480 EHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQ--PGHRRPQLEHRGFLRSLQSQPGNRH 310
+H + Q+ H++ Q +H R + QNQ H++ Q +H R Q+Q +RH
Sbjct: 569 QHHHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHRH 627
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -2
Query: 507 RLVNRRPQLEHRRCLRS*QNQPG-H-RRPQLEHRRCLRSLQNQPGHRRPQLEHR 352
RL RRP+L HRR R +P H RRP+L RR + HRR HR
Sbjct: 163 RLHTRRPRL-HRRRTRLHTRRPRLHTRRPRLHRRRPRLHTRRPRRHRRRPRLHR 215
>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
Length = 282
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +1
Query: 301 QLRMPISRLTL*AS*KTSMLQLRTPMSWLILXXXXXXXMLQLRTPMSRLILSAS*TTSML 480
Q+R P+ + S L++RTP LQ+R+P + S L
Sbjct: 160 QVRSPLFKSAAFLSSPQPSLRVRTPPFKSAPLFSSPQPSLQVRSPPFKSAAFPSSPQPSL 219
Query: 481 QLRTPIYKS 507
Q+RTP++KS
Sbjct: 220 QVRTPLFKS 228
>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1265
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -1
Query: 676 SKSSGCASIGRSTITSPFPCFVQFSRIFNPA---DRANFTVILDFLI 545
S S+G + GRS + S F C V SR + P DR+ +LD +
Sbjct: 981 SSSTGIRNDGRSVVPSVFYCLVGLSRPYLPEFANDRSVVPSVLDCFV 1027
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 47 SSHSLERRPPHQSNPSKSRISQYRNTKASTLECTSSPTKSFKNSPWP 187
SS L PPH N + ++ + A T T+ P S K P P
Sbjct: 627 SSSGLPDSPPHSDNMQEEKLFVSASYCAPTRYTTTPPKNSGKRKPGP 673
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,095,250
Number of Sequences: 59808
Number of extensions: 392162
Number of successful extensions: 1449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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