Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0366
         (724 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetit...    31   5.5  
AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetit...    31   5.5  

>AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = -2

Query: 462 RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFL 283
           R+    P H RP+  HR   RS +     RRP    R   R +   P +R S+  +R   
Sbjct: 287 RTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 344

Query: 282 RS 277
           RS
Sbjct: 345 RS 346


>AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = -2

Query: 462 RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFL 283
           R+    P H RP+  HR   RS +     RRP    R   R +   P +R S+  +R   
Sbjct: 287 RTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 344

Query: 282 RS 277
           RS
Sbjct: 345 RS 346


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,236,765
Number of Sequences: 237096
Number of extensions: 1768082
Number of successful extensions: 4777
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4748
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)