Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0366
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016658-5|AAB66044.1|  186|Caenorhabditis elegans Hypothetical ...    32   0.48 
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    28   5.9  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF016658-5|AAB66044.1|  186|Caenorhabditis elegans Hypothetical
           protein B0047.4 protein.
          Length = 186

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 23/93 (24%), Positives = 43/93 (46%)
 Frame = -3

Query: 470 VVYEADRISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSREIGILNWSFD 291
           V +  D++  D   ++WSIDV YE+   S D   +    +  +          ++NW  D
Sbjct: 64  VYFHCDKLKED--EIDWSIDVEYEITLKSSDGKRITKKTDHQFTKNEGYGFPKLMNW--D 119

Query: 290 IFYEVYRINREITLSTGISMSKIATLSTFSLNS 192
              + Y I+  IT+   + ++K+  +S  +L S
Sbjct: 120 TLIKDYLIDDSITIEVTVKITKMHGISKKALKS 152


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 724 SGSATFSTGRSTSWAFSKSSGCASIGRST 638
           SGS T ++G  TS+    SS CAS  R+T
Sbjct: 22  SGSVTVTSGTCTSYIADSSSNCASWARTT 50


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 724 SGSATFSTGRSTSWAFSKSSGCASIGRS 641
           SGS T ++G  TS+    SS CAS  R+
Sbjct: 199 SGSVTVTSGTCTSYIADSSSNCASWSRN 226


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = -3

Query: 467 VYEADRISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSREIGILNWSFDI 288
           ++E+  I R   ++NWS  +   +  I  D   L  S  +    Y    E G+LN SF  
Sbjct: 245 MHESGTIYRSNRLVNWSCALRSAISDIEVDKKELTGSTLIAVPGYDKKIEFGVLN-SF-- 301

Query: 287 FYEVYRINREITLST 243
            Y++   + EI +ST
Sbjct: 302 AYKIQGSDEEIVVST 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,823,777
Number of Sequences: 27780
Number of extensions: 293238
Number of successful extensions: 1092
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)