Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0366
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    27   0.24 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.1  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = -2

Query: 492 RPQLEHRRCLRS*QNQPGHRRP------QLEHRRCLRSLQNQPGHRRP 367
           +P+  H R  R  + +PG+ RP      +  H R  R  + +PG+ RP
Sbjct: 108 QPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 155



 Score = 24.2 bits (50), Expect = 1.3
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
 Frame = -2

Query: 492 RPQLEHRRCLRS*QNQ--PGHRRP------QLEHRRCLRSLQNQPGHRR------PQLEH 355
           +P+  H R  R  +++  PG+ RP      +  H R  R  + +PG+ R      P+  H
Sbjct: 80  QPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPH 139

Query: 354 RGFLRSLQSQPGN 316
               R  +++PGN
Sbjct: 140 PRLRREPEAEPGN 152


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 256 SRCQREFQCQKSQRCLHFRSIQSRPR 179
           S CQR F+ Q +  CL    I +R R
Sbjct: 275 SLCQRRFEEQGNYSCLKVDLIFTRDR 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,548
Number of Sequences: 438
Number of extensions: 3489
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)