Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0366
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50290.1 68414.m05638 expressed protein                             32   0.44 
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    31   1.0  
At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containi...    30   1.4  
At5g62580.1 68418.m07855 expressed protein                             29   3.1  
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ...    28   5.5  
At4g25270.1 68417.m03635 pentatricopeptide (PPR) repeat-containi...    28   5.5  
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro...    28   5.5  
At3g20540.1 68416.m02600 DNA-directed DNA polymerase family prot...    28   7.2  
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR...    28   7.2  
At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low ...    27   9.5  
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet...    27   9.5  

>At1g50290.1 68414.m05638 expressed protein
          Length = 134

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -1

Query: 697 RSTSWAFSKSSGCASIGRSTITSPF-PCFV---QFSRIFNPADRANFTVILDFLIRLFNW 530
           +  ++ F    G +S G+S     F P F+    F R+F P    +F+V L  + + FNW
Sbjct: 2   KEINFGFVSKDGRSSSGKSGFYKRFWPAFILPPPFDRLFLPIALVSFSVFLSIISKDFNW 61


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 453 QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRH 289
           Q+    + PQL+ ++     Q Q  H+  QL+H    +  Q Q   +H   +L+H
Sbjct: 707 QHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQHHQQQQQQQQQQQQQHQLTQLQH 761



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 489 PQLEHRRCLRS*QNQPGHRRPQLEH--RRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGN 316
           PQL+ ++     Q Q  H+  QL+H  ++  +  Q Q  H+  QL+H    +  Q+ P N
Sbjct: 715 PQLQQQQQQHQQQQQQQHQLSQLQHHQQQQQQQQQQQQQHQLTQLQHH-HQQQQQASPLN 773

Query: 315 RHSQ 304
           +  Q
Sbjct: 774 QMQQ 777


>At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 698

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 341 EAYRVSREIGILNWSFDIFYEVYRINREITLSTGI-SMSKIATLSTFSLNS 192
           EAY +S E G      D++ + YR+++ I L  GI  + K A +    LN+
Sbjct: 522 EAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGIDQVEKDAVILGAFLNA 572


>At5g62580.1 68418.m07855 expressed protein
          Length = 615

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 77  HQSNPSKSRISQYRNTKASTLECTSSPTKSFKNSP 181
           H S  S SR+S YRN  A T E  +S  + F  SP
Sbjct: 541 HDSKYSASRMSTYRNRNAETTEIQNSRHR-FNGSP 574


>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}, SP|P40991 Nucleolar protein NOP2
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 682

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 528 NQLKRRMRKSRMTVKLARSAGLNILLNWTKHGNGLVIVD--LPIEAQPEDL 674
           N LK R R+    V L R   L+ L  W+K G  LVI D  +PI A PE L
Sbjct: 290 NTLKTR-RRDLADVLLNRGVNLDPLSKWSKVG--LVIYDSQVPIGATPEYL 337


>At4g25270.1 68417.m03635 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 527

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 44  LSSHSLERRPPHQSNPSKSRISQYRNTKASTLECTS-SPT 160
           +SS S++++P H     + R +QY N   ++L  T  SPT
Sbjct: 16  VSSSSMKKKPRHHQQLKQHRQNQYNNNGFTSLSFTKPSPT 55


>At3g25500.1 68416.m03171 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 1051

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 44  LSSHSLERRPPHQSNPSKSRISQYRNTKASTLECTSSPTKSFKNSPWPGLN 196
           +S    E +PP  S P  + ++ YR  ++ +L   +S +   KNS   GLN
Sbjct: 306 MSPKRSEPKPPVISTPEPAELTDYRFVRSPSLS-LASLSSGLKNSDEVGLN 355


>At3g20540.1 68416.m02600 DNA-directed DNA polymerase family protein
           similar to PolI-like DNA polymerase [Oryza sativa]
           GI:19912795; contains Pfam profiles PF01612: 3'-5'
           exonuclease, PF00476: DNA polymerase I family A
          Length = 1034

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 95  KSRISQYRNTKASTLECTSSPTKSFKNSPWPGLN 196
           K R +++RN K   +     PT+ F  S WP ++
Sbjct: 590 KKRATKFRNIKLHRISDRPLPTEKFTASGWPSVS 623


>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 449 ISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYE 339
           +S++    +WS+D + E+ +  +DIG +   + VFYE
Sbjct: 73  LSKNYASSSWSLDELLEILKCKEDIGQI--VMTVFYE 107


>At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low
           similarity to coproporphyrinogen III oxidase from
           Geobacillus stearothermophilus [GI:2104798]; contains
           Pfam profile PF04055: radical SAM domain protein
          Length = 484

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 476 IDVVYEADRISRDIGVLNWSIDVV 405
           +  VYEA    ++ GV NWS+D++
Sbjct: 210 VSQVYEAIEFVKECGVENWSMDLI 233


>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
           beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
          Length = 792

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 557 ENDSEVGSISWVEYPAE 607
           +ND  +GSI W+ YP E
Sbjct: 560 KNDPRIGSIIWIGYPGE 576


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,004,170
Number of Sequences: 28952
Number of extensions: 275118
Number of successful extensions: 966
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)