Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0365
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   3.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   6.8  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   9.0  

>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 485 SLSGFDGASGSHSYDSNESNEEFHF*LKKEK 393
           +++ F   +G+    SNES+E+  F +KKEK
Sbjct: 207 TIAAFHDVNGNKDAVSNESDEDGDFLVKKEK 237


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 417  SFLAEKRKNILKHLAPPYPYQFFL 346
            +++AEKRK IL++LA    Y++ +
Sbjct: 1121 NYIAEKRKKILENLASLNYYEYII 1144


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 390 ILKHLAPPYPYQFFLLLRWSFPAAHGPLDVNWLPEPIDI 274
           I KH+  PY Y F+L+   S      P+    L + I +
Sbjct: 717 IEKHVTHPYQYDFYLISHPSLQGVSVPVHYTVLHDEIQM 755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,911
Number of Sequences: 5004
Number of extensions: 35204
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)