Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0365
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0832 - 8101657-8101708,8102581-8102660,8102740-8102910,810...    30   1.7  
12_02_0593 + 20874459-20874575,20875258-20875427,20875597-208756...    29   4.0  
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770...    28   7.0  

>08_01_0832 -
           8101657-8101708,8102581-8102660,8102740-8102910,
           8104181-8104282,8105245-8105346,8106246-8106374,
           8106521-8106565,8109387-8109502,8109602-8109670,
           8109756-8109801
          Length = 303

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 368 GGARCFNIFFLFSAKNEIPRCFRCYRSCGCR*PH 469
           G   C N      A    P  FR Y  CGC  PH
Sbjct: 115 GSTECLNFLMEAGANYGGPNDFRVYSVCGCSLPH 148


>12_02_0593 +
           20874459-20874575,20875258-20875427,20875597-20875672,
           20875764-20875894,20876570-20876692,20876780-20876893,
           20877163-20877239,20877405-20877472,20877740-20877861,
           20878041-20878180,20878411-20878603,20878692-20878827
          Length = 488

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 390 ILKHLAPPYPYQFFLLLRWSFPAAHGPLDVNW 295
           + KHL   YP+  FL   WS    + PL +++
Sbjct: 226 LAKHLKESYPFMLFLSSTWSKHKIYTPLTIHY 257


>05_03_0629 +
           16376575-16376689,16376792-16376839,16376927-16377012,
           16377791-16377878,16378387-16378472,16378604-16378690,
           16379111-16379293,16379387-16379470,16379590-16379651,
           16379752-16379827,16379906-16379968,16380060-16380141,
           16380840-16380916,16381502-16381549,16381681-16381743
          Length = 415

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 547 TGGWVCAGAVDSVRMACSSALVSAG 473
           T  W+C GA+D  +++ +  L S+G
Sbjct: 336 TAKWICVGAIDITQLSVAGYLFSSG 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,766,758
Number of Sequences: 37544
Number of extensions: 252687
Number of successful extensions: 626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)