Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0365
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)                 31   1.0  
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   30   1.8  

>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
          Length = 383

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 467 GASGSHSYDSNESNEEFHF*LKKEKIY*NIWLLRTHINSFYCLGGRSPRLTAH 309
           G + SH Y  N      H  L + ++    W LRT  +S    G +SP L+ H
Sbjct: 166 GTTPSHGYQVNHGLYALHNTLTRTRVPSQPWSLRTVQHSHSHTGTKSPMLSTH 218


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -2

Query: 366 YPYQFFLLLRWSFP---AAHGPLDVNWLPEPIDIYNVNAATNLP*GM 235
           YP+   +     FP   A H PLDV+ +  P D +N    TN P  M
Sbjct: 555 YPFPEMIYPEMMFPRMDAMHSPLDVSHVRNPFDPHNPCCITNDPLAM 601


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,513,566
Number of Sequences: 59808
Number of extensions: 264848
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)