Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0365
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56470.1 68416.m06280 F-box family protein similar to F-box p...    28   4.4  
At3g51820.1 68416.m05683 chlorophyll synthetase, putative identi...    27   7.8  

>At3g56470.1 68416.m06280 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 367

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 512 RQNGLQLSISLSGFDGASGSHSYDSNESNEEFHF*LKKEKIY*NIWLL 369
           +Q+G+   + LS F G   +  Y   +   E  F  KK+  Y NIW++
Sbjct: 305 KQSGIWNCLCLSVFHGFKRTCIYYKVDEESEVCFKWKKQNPYENIWIM 352


>At3g51820.1 68416.m05683 chlorophyll synthetase, putative identical
           to gi:972938 putative chlorophyll synthetase from
           Arabidopsis thaliana
          Length = 387

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 547 TGGWVCAGAVDSVRMACSSALVSAG 473
           T  W+C GA+D  +++ +  L+++G
Sbjct: 308 TAKWICVGAIDITQLSVAGYLLASG 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,892,435
Number of Sequences: 28952
Number of extensions: 192605
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)