Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0363
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 6e-35
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 144 6e-35
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 143 1e-34
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 143 1e-34
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 129 1e-30
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 74 7e-14
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 51 8e-07
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 48 4e-06
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 38 0.006
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 37 0.010
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 36 0.032
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.056
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 32 0.30
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 32 0.39
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 32 0.39
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8) 29 2.1
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 29 3.7
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 28 6.4
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 27 8.5
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012) 27 8.5
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 144 bits (348), Expect = 6e-35
Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE
Sbjct: 68 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 127
Query: 178 DGRTLSDYNIQKESTLHLV 234
DGRTLSDYNIQKESTLHLV
Sbjct: 128 DGRTLSDYNIQKESTLHLV 146
Score = 144 bits (348), Expect = 6e-35
Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE
Sbjct: 144 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 203
Query: 178 DGRTLSDYNIQKESTLHLV 234
DGRTLSDYNIQKESTLHLV
Sbjct: 204 DGRTLSDYNIQKESTLHLV 222
Score = 144 bits (348), Expect = 6e-35
Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE
Sbjct: 220 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 279
Query: 178 DGRTLSDYNIQKESTLHLV 234
DGRTLSDYNIQKESTLHLV
Sbjct: 280 DGRTLSDYNIQKESTLHLV 298
Score = 144 bits (348), Expect = 6e-35
Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE
Sbjct: 296 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 355
Query: 178 DGRTLSDYNIQKESTLHLV 234
DGRTLSDYNIQKESTLHLV
Sbjct: 356 DGRTLSDYNIQKESTLHLV 374
Score = 144 bits (348), Expect = 6e-35
Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE
Sbjct: 372 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 431
Query: 178 DGRTLSDYNIQKESTLHLV 234
DGRTLSDYNIQKESTLHLV
Sbjct: 432 DGRTLSDYNIQKESTLHLV 450
Score = 144 bits (348), Expect = 6e-35
Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE
Sbjct: 448 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 507
Query: 178 DGRTLSDYNIQKESTLHLV 234
DGRTLSDYNIQKESTLHLV
Sbjct: 508 DGRTLSDYNIQKESTLHLV 526
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 204
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLV 234
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 144 bits (348), Expect = 6e-35
Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE
Sbjct: 68 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 127
Query: 178 DGRTLSDYNIQKESTLHLV 234
DGRTLSDYNIQKESTLHLV
Sbjct: 128 DGRTLSDYNIQKESTLHLV 146
Score = 144 bits (348), Expect = 6e-35
Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE
Sbjct: 144 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 203
Query: 178 DGRTLSDYNIQKESTLHLV 234
DGRTLSDYNIQKESTLHLV
Sbjct: 204 DGRTLSDYNIQKESTLHLV 222
Score = 144 bits (348), Expect = 6e-35
Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE
Sbjct: 220 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 279
Query: 178 DGRTLSDYNIQKESTLHLV 234
DGRTLSDYNIQKESTLHLV
Sbjct: 280 DGRTLSDYNIQKESTLHLV 298
Score = 144 bits (348), Expect = 6e-35
Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE
Sbjct: 296 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 355
Query: 178 DGRTLSDYNIQKESTLHLV 234
DGRTLSDYNIQKESTLHLV
Sbjct: 356 DGRTLSDYNIQKESTLHLV 374
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 204
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLV 234
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 204
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLV 234
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 97.1 bits (231), Expect = 9e-21
Identities = 47/73 (64%), Positives = 50/73 (68%)
Frame = +3
Query: 255 KKRKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQYGAGVFMAVMED 434
KKRKKKNY+TP LAVL++YKVDENGKI RLRREC E GAGVFMA D
Sbjct: 78 KKRKKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMASHFD 137
Query: 435 RHYCGKCHSTMVF 473
R YCGKC T VF
Sbjct: 138 RQYCGKCCLTYVF 150
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 204
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLV 234
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 81.8 bits (193), Expect = 4e-16
Identities = 43/78 (55%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Frame = +1
Query: 4 HEVRRVK--MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
H V R++ MQI VK KT TL+VE SDT+E+VK KIQ++EGIPP QRL++ ++L
Sbjct: 68 HLVLRLRGGMQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELV 126
Query: 178 DGRTLSDYNIQKESTLHL 231
D R+L+DYNI++ S LHL
Sbjct: 127 DNRSLADYNIKQGSILHL 144
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 129 bits (312), Expect = 1e-30
Identities = 62/63 (98%), Positives = 63/63 (100%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 204
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 205 IQK 213
IQK
Sbjct: 139 IQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 74.1 bits (174), Expect = 7e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1
Query: 130 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 234
IPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 50.8 bits (116), Expect = 8e-07
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 31 IFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 207
I V TLTG+ I + + P TI VK I+ K G P +QQRL+F G+ L D T I
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132
Query: 208 QKESTLHLV 234
+TLHL+
Sbjct: 133 FAGATLHLI 141
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +1
Query: 10 VRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ---DKEGIPPNQQRLIFAGKQLED 180
++ V M I KTL +T +E+ +T+ +K KI+ K+ P +LI+AGK L D
Sbjct: 62 IKSVNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILND 121
Query: 181 GRTLSDYNIQKES 219
L +YNI ++S
Sbjct: 122 DNPLKEYNIDEKS 134
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDY 201
M++ V G TL+V +EN +A ++ + G+P ++ L G QL D +TL+ Y
Sbjct: 1 MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAY 60
Query: 202 NIQKESTLHLV 234
++++ + +V
Sbjct: 61 SVKENDVILMV 71
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 126
M ++++TLTG L V P +TI +VKAKIQ E
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 28 QIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 204
Q+F T TL +D + +K++I+ K GIP + QRL F K+L D TL+ N
Sbjct: 7 QVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVN 66
Query: 205 IQK 213
+++
Sbjct: 67 LKQ 69
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 35.5 bits (78), Expect = 0.032
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 204
MQ+ VKTL +T T V +EGIP +QRLIF GK L+D + L +++
Sbjct: 1 MQVTVKTLDSETRTFTVS--------------EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 34.7 bits (76), Expect = 0.056
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +1
Query: 16 RVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLS 195
R+++ + +G L++ + TIE ++ ++ DK G PP QR I K + +L
Sbjct: 33 RLRVVVEDSETSGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLL 92
Query: 196 DYNIQK 213
+++
Sbjct: 93 QCKVRE 98
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 127 GIPPNQQRLIFAGKQLEDGRTLSDYN 204
GIP +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/73 (21%), Positives = 38/73 (52%)
Frame = +1
Query: 4 HEVRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG 183
+ ++ + + ++T G T+ +E+ ++E++KA+ + + GIP RL LED
Sbjct: 176 YRLKFARKTMLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDS 235
Query: 184 RTLSDYNIQKEST 222
+ + +++T
Sbjct: 236 EKICERGHLQKAT 248
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 34 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 213
FV G+ ITL P + ++ + G P ++ K LED T++D + Q
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228
Query: 214 ESTLHL 231
+TL +
Sbjct: 229 GATLQI 234
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 88 TIENVKAKIQDKEGIPPNQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 231
T+ ++K + +K G+ + RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
Length = 180
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 78 AVRYHRECES*NSRQRGNPSQSTEVDLCWKAAGRWTYPLGLQY 206
+ Y +E E + RQR +S E D+C K R+T Y
Sbjct: 39 STEYTQESEGLDERQRARGKKSFECDICGKCFSRFTITTKYNY 81
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 37 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGR---TLSDYNI 207
V + G+T + P +I +K KI + +QRL++ +L++ + LS++ +
Sbjct: 60 VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119
Query: 208 QKESTLHLV 234
+T+ L+
Sbjct: 120 PPYATISLI 128
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 446 AVVTVLHHRHEHSGAV 399
A++TV+HHRH H A+
Sbjct: 525 AIITVIHHRHHHHPAL 540
>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 1105
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 120 QRGNPSQSTEVDLCWKAAGRWTYPLGLQYPEGIHPPPGVEAS 245
QRG S+ T + W+ +G + L IHPP V S
Sbjct: 299 QRGVSSRKTMISKAWQVSGVYHITLDANVTPVIHPPRRVAIS 340
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +1
Query: 46 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 177
L G +IT+ +E D +EN++ +K+ +PP ++L+F + L+
Sbjct: 102 LGGNSITV-IEGLDKLENLRELHMEKQHLPPG-EKLLFDPRTLQ 143
>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
Length = 1148
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/68 (23%), Positives = 36/68 (52%)
Frame = +1
Query: 7 EVRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGR 186
E R +Q ++T GKTI L E + ++ + ++K+G+ ++L + ++L+
Sbjct: 708 EGERDDLQDSLETAEGKTIKLTQELDEKMKLIAGIKEEKQGLAAEVKQLQKSSEELQQQL 767
Query: 187 TLSDYNIQ 210
T ++ +Q
Sbjct: 768 TDTEEKLQ 775
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,201,187
Number of Sequences: 59808
Number of extensions: 353668
Number of successful extensions: 927
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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